Variant report

Variant	rs1092415
Chromosome Location	chr1:160895391-160895392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10908813	0.90[ASN][1000 genomes]
rs11587040	0.91[ASN][1000 genomes]
rs12080285	0.81[ASN][1000 genomes]
rs12125065	0.92[ASN][1000 genomes]
rs12740520	0.92[ASN][1000 genomes]
rs1855186	0.92[ASN][1000 genomes]
rs1930598	0.92[ASN][1000 genomes]
rs2184064	0.92[ASN][1000 genomes]
rs2481069	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3953093	0.90[ASN][1000 genomes]
rs4656277	0.92[ASN][1000 genomes]
rs4656282	0.91[ASN][1000 genomes]
rs4656964	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160894800-160895400	Active TSS	Duodenum Mucosa	Duodenum
2	chr1:160895000-160895600	Enhancers	Liver	Liver
3	chr1:160895000-160896000	Enhancers	Stomach Mucosa	stomach
4	chr1:160895200-160895400	Enhancers	A549	lung
5	chr1:160895200-160895800	Enhancers	Pancreas	Pancrea
6	chr1:160895200-160896000	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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