Variant report

Variant	rs10928459
Chromosome Location	chr2:134504997-134504998
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1110671	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11903316	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12473486	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12989443	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12998715	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1374407	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1446740	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1446741	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1446742	0.85[AMR][1000 genomes]
rs1446744	0.85[AMR][1000 genomes]
rs1900350	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4386376	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4533517	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4589812	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6414016	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6430450	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6430451	0.86[AMR][1000 genomes]
rs6760899	0.88[AMR][1000 genomes]
rs7576406	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134503600-134505400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:134503600-134506600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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