Variant report

Variant	rs10933834
Chromosome Location	chr3:105681828-105681829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17193380	0.94[ASN][1000 genomes]
rs2455889	0.89[EUR][1000 genomes]
rs2455890	0.89[EUR][1000 genomes]
rs2470696	0.89[EUR][1000 genomes]
rs2470711	0.89[EUR][1000 genomes]
rs4498074	0.91[EUR][1000 genomes]
rs7427688	0.84[EUR][1000 genomes]
rs7635557	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105677600-105689400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:105677800-105684400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:105679400-105683600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:105680800-105682600	Enhancers	HepG2	liver
5	chr3:105681200-105682000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:105681200-105682400	Enhancers	Right Atrium	heart
7	chr3:105681200-105682400	Enhancers	Stomach Mucosa	stomach
8	chr3:105681200-105682400	Enhancers	Hela-S3	cervix
9	chr3:105681400-105682000	Enhancers	HUVEC	blood vessel
10	chr3:105681600-105682400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:105681800-105683600	Weak transcription	Osteobl	bone
12	chr3:105681800-105686000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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