The 2.0 version of rSNPBase

Variant report

Variant rs10939903
Chromosome Location chr5:60751467-60751468
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60737800-60757000 Weak transcription Gastric stomach
2 chr5:60739600-60752200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr5:60743600-60756200 Weak transcription Fetal Kidney kidney
4 chr5:60744400-60767800 Weak transcription Monocytes-CD14+_RO01746 blood
5 chr5:60746000-60759600 Weak transcription Aorta Aorta
6 chr5:60746200-60759800 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr5:60746400-60758600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr5:60747000-60751800 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr5:60747000-60752200 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr5:60747000-60752200 Weak transcription Fetal Intestine Small intestine
11 chr5:60747000-60752400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr5:60747000-60752400 Weak transcription Brain Hippocampus Middle brain
13 chr5:60747000-60757200 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr5:60747000-60760600 Weak transcription NHLF lung
15 chr5:60747000-60762800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr5:60747200-60754200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr5:60747200-60757000 Weak transcription Small Intestine intestine
18 chr5:60747200-60757200 Weak transcription Left Ventricle heart
19 chr5:60747200-60760200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr5:60747400-60752200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr5:60747400-60755200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr5:60747600-60752200 Weak transcription A549 lung
23 chr5:60747600-60760400 Weak transcription NH-A brain
24 chr5:60747600-60770600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr5:60747800-60757600 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr5:60748000-60757000 Weak transcription Fetal Intestine Large intestine
27 chr5:60748600-60757000 Weak transcription HSMM muscle
28 chr5:60748800-60757800 Weak transcription HSMMtube muscle
29 chr5:60749000-60762200 Weak transcription Muscle Satellite Cultured Cells --
30 chr5:60750000-60760400 Weak transcription Primary T cells from cord blood blood
31 chr5:60750400-60757200 Weak transcription Liver Liver
32 chr5:60750600-60752600 Enhancers HUES64 Cell Line embryonic stem cell
33 chr5:60750600-60752600 Enhancers Stomach Mucosa stomach
34 chr5:60750600-60753200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr5:60751000-60751600 Enhancers H1 Cell Line embryonic stem cell
36 chr5:60751000-60752600 Enhancers HUES48 Cell Line embryonic stem cell
37 chr5:60751200-60751600 Flanking Active TSS ES-I3 Cell Line embryonic stem cell
38 chr5:60751200-60751600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr5:60751200-60751600 Enhancers H9 Cell Line embryonic stem cell
40 chr5:60751200-60751600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
41 chr5:60751200-60751600 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
42 chr5:60751200-60751600 Active TSS iPS-20b Cell Line embryonic stem cell
43 chr5:60751200-60751600 Enhancers Brain Angular Gyrus brain
44 chr5:60751200-60751600 Flanking Active TSS Brain Cingulate Gyrus brain
45 chr5:60751200-60751600 Enhancers Psoas Muscle Psoas
46 chr5:60751200-60751600 Enhancers Right Atrium heart
47 chr5:60751200-60751600 Enhancers K562 blood
48 chr5:60751200-60752000 Enhancers HUES6 Cell Line embryonic stem cell
49 chr5:60751200-60752600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr5:60751200-60752600 Enhancers iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015