Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1029091	0.89[ASN][1000 genomes]
rs10943958	0.85[ASN][1000 genomes]
rs13197043	0.91[ASN][1000 genomes]
rs13199206	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13199805	0.89[ASN][1000 genomes]
rs13208965	0.85[ASN][1000 genomes]
rs13216525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1412864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[ASN][1000 genomes]
rs1412865	0.81[ASN][1000 genomes]
rs1977622	0.82[ASN][1000 genomes]
rs3800489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[ASN][1000 genomes]
rs3800490	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[ASN][1000 genomes]
rs4142266	0.90[ASN][1000 genomes]
rs4351235	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4634434	0.89[ASN][1000 genomes]
rs4710257	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4710436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[ASN][1000 genomes]
rs4710439	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4710449	0.81[ASN][1000 genomes]
rs58429651	0.87[ASN][1000 genomes]
rs756274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7762059	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7764184	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1798215	chr6:64487748-64544220	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64485200-64514400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:64493000-64493600	Flanking Active TSS	Liver	Liver
3	chr6:64493000-64493600	Enhancers	Duodenum Mucosa	Duodenum
4	chr6:64493000-64495800	Enhancers	GM12878-XiMat	blood

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