Variant report

Variant	rs1094607
Chromosome Location	chr3:23062581-23062582
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs115374	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13078875	0.81[EUR][1000 genomes]
rs1355740	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1817581	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1849478	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2171030	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2359367	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688414	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs518725	0.83[EUR][1000 genomes]
rs582089	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs603056	0.86[EUR][1000 genomes]
rs6550719	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs683436	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs861983	0.81[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23060400-23062600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:23061600-23062600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:23061600-23063400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr3:23061600-23063800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:23062000-23062600	Enhancers	Adipose Nuclei	Adipose
6	chr3:23062200-23062800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:23062200-23063200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:23062400-23063200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:23062400-23063400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:23062400-23069200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links