Variant report

Variant	rs10951601
Chromosome Location	chr7:39372764-39372765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr7:39372678-39372867	GM12878	blood:	n/a	n/a
2	MAZ	chr7:39372742-39372784	GM12878	blood:	n/a	n/a
3	EP300	chr7:39372751-39372869	GM12878	blood:	n/a	n/a
4	RELA	chr7:39372645-39373056	GM12878	blood:	n/a	n/a
5	EBF1	chr7:39372506-39372971	GM12878	blood:	n/a	chr7:39372660-39372671 chr7:39372741-39372750
6	RELA	chr7:39372635-39373098	GM19099	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000206947	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1019083	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10951600	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs10951602	1.00[CEU][hapmap]
rs11760438	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs11761411	0.84[CEU][hapmap]
rs12530511	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12533451	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12533481	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12537044	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs17619162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17686887	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17701660	0.85[CEU][hapmap]
rs2074935	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074937	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2299139	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3823619	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4437552	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4551241	0.84[CEU][hapmap]
rs59663839	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73118050	0.81[EUR][1000 genomes]
rs73121835	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73123797	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73125530	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73128428	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39366400-39373600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:39366600-39372800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:39369400-39376000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:39371800-39374400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:39372000-39373800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:39372000-39374200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:39372000-39374600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:39372000-39374800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:39372000-39379200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:39372200-39373400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:39372400-39374200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:39372400-39374600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:39372400-39374800	Enhancers	H1 Cell Line	embryonic stem cell

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