Variant report

Variant	rs10953459
Chromosome Location	chr7:104562595-104562596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104560247..104565099-chr7:104651961..104655493,7	MCF-7	breast:
2	chr7:104560339..104562932-chr7:104653085..104655925,2	MCF-7	breast:
3	chr7:104561816..104567252-chr7:104650571..104656074,9	K562	blood:

Variant related genes	Relation type
ENSG00000005483	Chromatin interaction
ENSG00000228393	Chromatin interaction
ENSG00000239569	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10231439	0.89[ASN][1000 genomes]
rs10245078	0.89[ASN][1000 genomes]
rs10276653	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11978074	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12333765	0.89[ASN][1000 genomes]
rs2428161	0.80[ASN][1000 genomes]
rs59869531	0.91[ASN][1000 genomes]
rs62485458	0.83[EUR][1000 genomes]
rs6949656	0.91[ASN][1000 genomes]
rs7795893	0.94[ASN][1000 genomes]
rs886145	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104552600-104563400	Weak transcription	Pancreas	Pancrea
2	chr7:104554600-104562800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:104555200-104563400	Weak transcription	Brain Substantia Nigra	brain
4	chr7:104555200-104563600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:104556000-104562600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:104558400-104571600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:104559000-104563600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:104559200-104562800	Weak transcription	Stomach Mucosa	stomach
9	chr7:104559200-104563200	Weak transcription	GM12878-XiMat	blood
10	chr7:104559200-104563600	Weak transcription	Hela-S3	cervix
11	chr7:104559600-104562800	Weak transcription	Liver	Liver
12	chr7:104560400-104563600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:104560800-104563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:104561000-104563200	Enhancers	Fetal Intestine Large	intestine
15	chr7:104561400-104562600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:104561400-104563000	Genic enhancers	Fetal Intestine Small	intestine
17	chr7:104561600-104564000	Enhancers	NHDF-Ad	bronchial
18	chr7:104561600-104564200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:104561800-104562800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:104561800-104563600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:104561800-104563600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr7:104561800-104563600	Enhancers	Duodenum Mucosa	Duodenum
23	chr7:104562000-104562800	Weak transcription	Fetal Kidney	kidney
24	chr7:104562200-104563200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:104562200-104564000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:104562400-104563600	Weak transcription	Small Intestine	intestine
27	chr7:104562400-104564000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:104562400-104564000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:104562400-104564200	Enhancers	Osteobl	bone
30	chr7:104562400-104567000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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