Variant report
| Variant | rs10954140 |
|---|---|
| Chromosome Location | chr7:126603829-126603830 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1003037 | 0.90[YRI][hapmap] |
| rs1003038 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs1154333 | 1.00[YRI][hapmap] |
| rs11563410 | 1.00[CHB][hapmap] |
| rs11767521 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1204553 | 0.82[YRI][hapmap] |
| rs1204558 | 0.82[YRI][hapmap] |
| rs1204561 | 0.82[YRI][hapmap] |
| rs1204565 | 0.82[YRI][hapmap] |
| rs1204585 | 0.82[YRI][hapmap] |
| rs1204589 | 1.00[YRI][hapmap] |
| rs1204595 | 1.00[YRI][hapmap] |
| rs12532030 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17862257 | 1.00[CHB][hapmap] |
| rs17863168 | 0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17864092 | 0.90[YRI][hapmap] |
| rs2518956 | 0.82[YRI][hapmap] |
| rs2535928 | 1.00[YRI][hapmap] |
| rs34682508 | 1.00[CHB][hapmap] |
| rs67993661 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7777099 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758132 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2759562 | chr7:126494789-126677843 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv427805 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
