Variant report
| Variant | rs10954143 |
|---|---|
| Chromosome Location | chr7:126728412-126728413 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126727758..126729748-chr7:126749664..126752422,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1361955 | 0.84[CEU][hapmap];0.89[JPT][hapmap] |
| rs1419444 | 0.85[EUR][1000 genomes] |
| rs1858784 | 0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes] |
| rs2040502 | 0.87[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap] |
| rs2106183 | 0.84[CEU][hapmap];0.94[JPT][hapmap] |
| rs2237782 | 0.81[EUR][1000 genomes] |
| rs2237785 | 0.89[JPT][hapmap] |
| rs2283094 | 0.89[JPT][hapmap] |
| rs2299533 | 0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2299540 | 0.89[JPT][hapmap] |
| rs2299542 | 0.94[JPT][hapmap];1.00[YRI][hapmap] |
| rs2402855 | 0.89[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6950264 | 0.89[JPT][hapmap] |
| rs72020723 | 0.82[EUR][1000 genomes] |
| rs7808643 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs929173 | 0.80[EUR][1000 genomes] |
| rs978874 | 0.88[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2761367 | chr7:126717157-126865324 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
