Variant report

Variant	rs10954597
Chromosome Location	chr7:137699400-137699401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10954596	0.99[EUR][1000 genomes]
rs10954599	0.81[AMR][1000 genomes]
rs11769891	0.98[EUR][1000 genomes]
rs11972734	0.81[CEU][hapmap];0.97[EUR][1000 genomes]
rs11977965	0.82[AMR][1000 genomes]
rs13232124	0.81[CEU][hapmap];0.99[EUR][1000 genomes]
rs1424376	0.95[EUR][1000 genomes]
rs34394140	0.94[EUR][1000 genomes]
rs34469503	0.99[EUR][1000 genomes]
rs34970488	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35508415	0.96[EUR][1000 genomes]
rs35556241	0.99[EUR][1000 genomes]
rs56083840	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6969540	0.80[AMR][1000 genomes]
rs713471	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137687000-137700000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:137688000-137699600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:137688000-137703800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:137693600-137700200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:137694200-137699800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:137697200-137700400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:137698200-137699400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:137698200-137699600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:137698600-137700000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:137698600-137700600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:137699200-137699600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:137699200-137699800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr7:137699200-137700000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:137699200-137700200	Enhancers	K562	blood
15	chr7:137699200-137700400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr7:137699200-137700800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:137699400-137700400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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