Variant report

Variant	rs10955174
Chromosome Location	chr8:99452962-99452963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99451152..99453654-chr8:99459310..99462023,3	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10098835	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099978	0.81[CEU][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs10100346	0.96[CEU][hapmap]
rs10100378	0.81[EUR][1000 genomes]
rs10100546	0.81[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10100577	0.81[EUR][1000 genomes]
rs10111264	0.82[EUR][1000 genomes]
rs10441501	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10955175	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10955176	0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10955177	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10955178	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10955179	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10955181	0.83[MEX][hapmap];0.85[TSI][hapmap]
rs10955184	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs10955185	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs11781352	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11985382	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11994001	0.84[ASN][1000 genomes]
rs12056323	0.91[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.83[ASN][1000 genomes]
rs12541026	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs12542022	0.81[CEU][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes]
rs12542931	0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs12544768	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs12547922	0.81[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs12548477	0.81[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs12549563	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12550198	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs13270534	0.91[CHB][hapmap];0.98[CHD][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs16892236	0.81[CEU][hapmap];0.87[TSI][hapmap]
rs16896996	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897061	0.84[TSI][hapmap]
rs1893884	0.95[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.87[JPT][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2001728	0.80[ASN][1000 genomes]
rs34580087	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3802198	0.81[CEU][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs4130753	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4236853	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4301421	0.81[CEU][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs4332102	0.81[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs4370499	0.87[TSI][hapmap];0.81[AMR][1000 genomes]
rs4388428	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4407850	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734406	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4734407	0.81[CEU][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4735564	0.91[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.82[ASN][1000 genomes]
rs4995528	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62532757	0.83[ASN][1000 genomes]
rs6651181	0.85[TSI][hapmap]
rs6985600	0.82[ASN][1000 genomes]
rs6993480	0.80[MEX][hapmap]
rs7007360	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7011763	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7015739	0.81[CEU][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs7815227	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7845395	0.81[CEU][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7845750	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9642951	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1034492	chr8:99436341-99456516	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10955174	OSR2	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99441400-99458000	Weak transcription	Ovary	ovary
2	chr8:99441400-99472600	Weak transcription	Pancreas	Pancrea
3	chr8:99449600-99453200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:99450400-99453000	Enhancers	Fetal Heart	heart
5	chr8:99451600-99453200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:99452200-99453200	Weak transcription	Brain Anterior Caudate	brain

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