Variant report

Variant	rs10955177
Chromosome Location	chr8:99491006-99491007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99488393..99491687-chr8:99492350..99494560,3	MCF-7	breast:
2	chr8:99489060..99491357-chr8:99493782..99497773,3	K562	blood:
3	chr8:99488977..99492664-chr8:99493319..99496807,5	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10086870	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10098835	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10099978	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10100346	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10100378	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10100546	0.95[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10100577	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10101919	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10108828	0.87[JPT][hapmap]
rs10111264	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10441501	0.96[CEU][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10955174	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10955175	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10955176	0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10955178	0.89[CEU][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10955179	0.85[CEU][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10955180	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10955181	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10955184	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10955185	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11781352	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11985382	0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12056323	0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12541026	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12542022	0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12542931	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12544768	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12547922	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12548477	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12549563	0.81[AMR][1000 genomes]
rs12550198	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12677171	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13268777	0.87[ASN][1000 genomes]
rs13270534	0.83[JPT][hapmap]
rs16892236	0.84[AMR][1000 genomes]
rs16897061	0.83[JPT][hapmap]
rs1893884	0.83[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34580087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3802198	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4130753	0.96[CEU][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4236853	0.81[AMR][1000 genomes]
rs4301421	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4332102	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4370499	0.83[JPT][hapmap];0.88[AMR][1000 genomes]
rs4388428	0.96[CEU][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4407850	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4442112	0.83[JPT][hapmap]
rs4618666	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4734406	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4734407	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735564	0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4995528	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62532757	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6651181	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6991043	0.95[JPT][hapmap]
rs6993480	0.83[YRI][hapmap];0.83[EUR][1000 genomes]
rs7007360	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7011763	0.85[CEU][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7013445	0.81[YRI][hapmap]
rs7015739	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7016626	0.83[JPT][hapmap]
rs7815227	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7845395	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7845750	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9642951	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99461800-99525000	Weak transcription	Psoas Muscle	Psoas
2	chr8:99477400-99491400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr8:99479600-99504600	Weak transcription	NHEK	skin
4	chr8:99479800-99502800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:99486600-99536000	Weak transcription	Placenta	Placenta
6	chr8:99488200-99491400	Enhancers	HSMMtube	muscle
7	chr8:99489000-99492400	Enhancers	NHDF-Ad	bronchial
8	chr8:99489200-99491200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:99489200-99491400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr8:99489200-99492200	Enhancers	NH-A	brain
11	chr8:99489200-99492600	Enhancers	HSMM	muscle
12	chr8:99489400-99491200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:99489600-99491200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:99490000-99491200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:99490000-99491600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:99490000-99491800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:99490200-99492000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:99490200-99492400	Enhancers	NHLF	lung
19	chr8:99490200-99492800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:99490400-99491200	Enhancers	Fetal Thymus	thymus
21	chr8:99490400-99492200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:99490400-99493000	Enhancers	Osteobl	bone
23	chr8:99490400-99547600	Weak transcription	Ovary	ovary
24	chr8:99490800-99492400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:99490800-99492600	Enhancers	Fetal Heart	heart
26	chr8:99490800-99499400	Weak transcription	Small Intestine	intestine
27	chr8:99491000-99491400	Enhancers	Spleen	Spleen
28	chr8:99491000-99491600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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