Variant report

Variant	rs10955178
Chromosome Location	chr8:99501495-99501496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10098835	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10100346	0.88[CEU][hapmap]
rs10100378	0.80[AMR][1000 genomes]
rs10100546	0.83[AMR][1000 genomes]
rs10100577	0.81[AMR][1000 genomes]
rs10441501	0.96[CEU][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10755896	0.82[JPT][hapmap]
rs10955174	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10955175	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10955176	0.91[AMR][1000 genomes]
rs10955177	0.89[CEU][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10955179	0.80[CEU][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs11781352	0.86[AMR][1000 genomes]
rs11985382	0.82[JPT][hapmap];0.88[AMR][1000 genomes]
rs12056323	0.82[JPT][hapmap]
rs12542022	0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12546344	0.87[ASN][1000 genomes]
rs12547922	0.80[AMR][1000 genomes]
rs12548477	0.80[AMR][1000 genomes]
rs12549563	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12550198	0.80[AMR][1000 genomes]
rs12550783	0.82[JPT][hapmap]
rs12677183	0.82[JPT][hapmap]
rs13257475	1.00[JPT][hapmap]
rs13270534	0.82[JPT][hapmap]
rs16892236	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16897061	0.81[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs16897076	1.00[JPT][hapmap]
rs1893884	0.81[CEU][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap]
rs34114299	0.81[JPT][hapmap]
rs34580087	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4130753	0.96[CEU][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4236853	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4370499	0.81[CEU][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4388428	0.96[CEU][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4407850	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4442112	0.82[JPT][hapmap]
rs4509292	0.82[JPT][hapmap]
rs4618666	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4734406	0.92[CEU][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4734407	0.82[AMR][1000 genomes]
rs4734410	0.82[JPT][hapmap]
rs4735564	0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs4735569	0.82[JPT][hapmap]
rs4995528	0.96[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62532757	0.81[AMR][1000 genomes]
rs6651182	0.82[JPT][hapmap]
rs6992925	0.81[JPT][hapmap]
rs7007360	0.96[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7011763	0.84[CEU][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes]
rs7015739	0.81[AMR][1000 genomes]
rs7016626	0.82[JPT][hapmap]
rs7815227	0.92[CEU][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7845395	0.82[AMR][1000 genomes]
rs7845750	0.85[AMR][1000 genomes]
rs9642951	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99461800-99525000	Weak transcription	Psoas Muscle	Psoas
2	chr8:99479600-99504600	Weak transcription	NHEK	skin
3	chr8:99479800-99502800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:99486600-99536000	Weak transcription	Placenta	Placenta
5	chr8:99490400-99547600	Weak transcription	Ovary	ovary
6	chr8:99491400-99504800	Weak transcription	HSMMtube	muscle
7	chr8:99492600-99505600	Weak transcription	HSMM	muscle
8	chr8:99498000-99502600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:99499600-99502800	Weak transcription	NH-A	brain
10	chr8:99499600-99504000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:99500200-99502200	Weak transcription	A549	lung
12	chr8:99500200-99502600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:99500200-99502600	Weak transcription	Osteobl	bone
14	chr8:99500200-99502800	Weak transcription	NHDF-Ad	bronchial
15	chr8:99500200-99504400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:99500200-99517600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:99500400-99502600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:99500400-99505600	Weak transcription	NHLF	lung
19	chr8:99500400-99558800	Weak transcription	Aorta	Aorta
20	chr8:99501000-99504400	Weak transcription	Fetal Lung	lung
21	chr8:99501000-99505600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:99501400-99502800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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