Variant report

Variant	rs10955179
Chromosome Location	chr8:99509184-99509185
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10086870	0.83[JPT][hapmap]
rs10096329	0.81[JPT][hapmap]
rs10098835	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10100346	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs10100378	0.80[AMR][1000 genomes]
rs10100546	0.81[AMR][1000 genomes]
rs10101919	0.83[JPT][hapmap]
rs10441501	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955174	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10955175	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10955176	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10955177	0.85[CEU][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10955178	0.80[CEU][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs10955180	0.83[JPT][hapmap]
rs10955181	0.82[JPT][hapmap]
rs10955185	0.83[JPT][hapmap]
rs11781352	0.84[AMR][1000 genomes]
rs11985382	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11994001	0.95[ASN][1000 genomes]
rs12056323	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12541026	0.82[JPT][hapmap]
rs12542931	0.82[JPT][hapmap]
rs12544768	0.83[JPT][hapmap]
rs12547922	0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs12548477	0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs12550198	0.83[JPT][hapmap];0.80[AMR][1000 genomes]
rs12677171	0.81[EUR][1000 genomes]
rs13257475	0.86[JPT][hapmap]
rs13270534	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16896996	0.82[ASN][1000 genomes]
rs16897076	0.86[JPT][hapmap]
rs1893884	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2001728	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34580087	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3802198	0.82[JPT][hapmap]
rs4130753	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4301421	0.82[JPT][hapmap]
rs4332102	0.81[JPT][hapmap]
rs4388428	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4407850	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734406	0.89[CEU][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4734407	0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs4735564	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4995528	0.88[CEU][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62532757	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6651181	0.82[JPT][hapmap]
rs6985600	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7007360	0.88[CEU][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7011763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7013445	0.84[YRI][hapmap]
rs7015739	0.82[JPT][hapmap];0.83[AMR][1000 genomes]
rs7815227	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7845395	0.82[JPT][hapmap];0.86[AMR][1000 genomes]
rs7845750	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9642951	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99461800-99525000	Weak transcription	Psoas Muscle	Psoas
2	chr8:99486600-99536000	Weak transcription	Placenta	Placenta
3	chr8:99490400-99547600	Weak transcription	Ovary	ovary
4	chr8:99500200-99517600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:99500400-99558800	Weak transcription	Aorta	Aorta
6	chr8:99503200-99530600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:99503200-99536200	Weak transcription	Liver	Liver
8	chr8:99504600-99536200	Weak transcription	Fetal Lung	lung
9	chr8:99506000-99519800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:99506200-99522400	Weak transcription	HSMMtube	muscle
11	chr8:99506400-99509400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:99506600-99510600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:99506800-99518400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:99507800-99528200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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