Variant report

Variant	rs10955282
Chromosome Location	chr8:103176946-103176947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10093024	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs10103532	0.85[JPT][hapmap]
rs1037701	0.91[ASN][1000 genomes]
rs1111911	0.95[CHB][hapmap];0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs1111912	0.90[JPT][hapmap]
rs1148514	0.92[ASN][1000 genomes]
rs1148515	0.84[ASN][1000 genomes]
rs1148516	0.92[ASN][1000 genomes]
rs1148517	0.91[ASN][1000 genomes]
rs1148519	0.90[ASN][1000 genomes]
rs1265119	0.98[ASN][1000 genomes]
rs1265122	0.91[ASN][1000 genomes]
rs1265124	0.91[ASN][1000 genomes]
rs13268773	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs1547370	0.84[ASN][1000 genomes]
rs1892965	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs2051274	0.82[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs2105615	0.95[CHB][hapmap]
rs2387095	0.83[ASN][1000 genomes]
rs4291239	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs4734053	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs4734616	0.85[ASN][1000 genomes]
rs62524263	0.83[ASN][1000 genomes]
rs6468817	0.84[ASN][1000 genomes]
rs6468818	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs6980613	0.95[CHB][hapmap];0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs6982041	0.81[ASN][1000 genomes]
rs6992948	0.82[ASN][1000 genomes]
rs7000087	0.85[ASN][1000 genomes]
rs7000803	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs7819114	0.84[ASN][1000 genomes]
rs7826028	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs9942800	0.85[ASN][1000 genomes]
rs9942805	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10955282	COX6C	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103175000-103180400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:103175200-103182400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:103176000-103177400	Weak transcription	Ovary	ovary
4	chr8:103176400-103177600	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:103176600-103177000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:103176800-103177800	Enhancers	Colon Smooth Muscle	Colon

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