Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10099741	0.87[EUR][1000 genomes]
rs1351360	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1351364	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1351366	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1383192	0.91[ASN][1000 genomes]
rs1383196	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1480186	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1531660	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1531661	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16929130	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1823666	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1871592	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1993127	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1993128	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1993129	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2054531	0.83[EUR][1000 genomes]
rs2199842	0.88[ASN][1000 genomes]
rs2882924	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4374986	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7826556	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv890959	chr8:63449156-63515522	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2761431	chr8:63458672-63467199	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63459800-63465400	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:63461800-63465200	Weak transcription	Fetal Brain Male	brain
3	chr8:63463800-63465000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:63463800-63465200	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search: