Variant report

Variant	rs10957317
Chromosome Location	chr8:49888870-49888871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10957357	0.87[YRI][hapmap]
rs11990854	0.84[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap]
rs12545097	0.85[EUR][1000 genomes]
rs12680366	0.89[EUR][1000 genomes]
rs1511363	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1567555	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1828495	0.86[EUR][1000 genomes]
rs2137013	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.83[EUR][1000 genomes]
rs4873092	0.91[YRI][hapmap]
rs4873093	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.87[YRI][hapmap];0.83[EUR][1000 genomes]
rs4873303	0.91[EUR][1000 genomes]
rs6983929	0.85[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs6984804	0.81[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs7005693	0.84[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap]
rs7011891	0.92[ASW][hapmap];0.85[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.87[YRI][hapmap]
rs7013425	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7835336	0.85[EUR][1000 genomes]
rs974781	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024584	chr8:49879137-49906780	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv6181	chr8:49885342-49930514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10957317	SNTG1	cis	cerebellum	SCAN
rs10957317	C8orf22	cis	Muscle Skeletal	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49881600-49889400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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