Variant report

Variant	rs10957337
Chromosome Location	chr8:49959027-49959028
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:49958445..49960562-chr8:49978608..49980368,2	K562	blood:
2	chr8:49955516..49959345-chr8:49967725..49970729,4	K562	blood:
3	chr8:49948031..49950332-chr8:49957405..49959978,2	K562	blood:
4	chr8:49955334..49957010-chr8:49957761..49960286,2	K562	blood:
5	chr8:49954242..49956834-chr8:49957466..49960286,2	K562	blood:
6	chr8:49957600..49959264-chr8:49982765..49984900,3	K562	blood:
7	chr8:49957733..49959287-chr8:50036754..50039574,2	K562	blood:
8	chr8:49892142..49894489-chr8:49957987..49960714,3	K562	blood:
9	chr8:49957324..49959280-chr8:49961057..49962998,2	K562	blood:
10	chr8:49936864..49938883-chr8:49957396..49960240,2	K562	blood:
11	chr8:49957437..49960901-chr8:49963560..49965969,3	K562	blood:

No data

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10105794	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10435574	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10435612	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10504070	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10504072	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10808744	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10808745	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10957356	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10957357	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11778863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785310	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11997959	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12056536	0.86[EUR][1000 genomes]
rs12156111	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12546490	0.93[EUR][1000 genomes]
rs12546839	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12548464	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12549138	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1511359	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1511365	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17644494	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2292399	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28685207	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs341801	0.81[EUR][1000 genomes]
rs341802	0.81[EUR][1000 genomes]
rs341813	0.81[EUR][1000 genomes]
rs35282337	0.94[EUR][1000 genomes]
rs4348510	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4406405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4493917	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4493918	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4873092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873096	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4873098	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4873300	0.86[EUR][1000 genomes]
rs4873304	0.94[EUR][1000 genomes]
rs4873306	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873307	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873309	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4873312	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4873314	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4873317	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55795863	0.86[EUR][1000 genomes]
rs55920380	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55948643	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56057508	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56074306	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56078938	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57085792	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59064792	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60449482	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62507167	0.88[EUR][1000 genomes]
rs62507177	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62507178	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62507245	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62507246	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62507247	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62507251	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62507252	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62507253	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6472220	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6997703	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7817571	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7820270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9298106	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9643394	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9643395	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs974780	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49958600-49959800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr8:49959000-49961200	Active TSS	K562	blood

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