Variant report

Variant	rs10958370
Chromosome Location	chr8:54417710-54417711
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10095702	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10958369	0.81[EUR][1000 genomes]
rs11781325	0.86[EUR][1000 genomes]
rs13273113	0.85[EUR][1000 genomes]
rs1477956	0.82[ASN][1000 genomes]
rs1477957	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17361507	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1904072	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2068035	0.88[EUR][1000 genomes]
rs6473839	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6473840	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6473842	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7004273	0.96[ASN][1000 genomes]
rs7812717	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7829521	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10958370	RP11-1081M5.1	cis	Artery Tibial	GTEx
rs10958370	RP11-1081M5.1	cis	Artery Aorta	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54409600-54426600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:54410200-54421600	Weak transcription	Ovary	ovary
3	chr8:54411800-54433400	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:54413200-54421400	Weak transcription	Aorta	Aorta
5	chr8:54415600-54418600	Weak transcription	Fetal Heart	heart
6	chr8:54416000-54418000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:54416200-54418000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:54416800-54426600	Weak transcription	Right Ventricle	heart
9	chr8:54417000-54419400	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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