Variant report

Variant	rs10961554
Chromosome Location	chr9:14531244-14531245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10756570	0.82[ASN][1000 genomes]
rs10810169	0.82[ASN][1000 genomes]
rs10810170	0.80[ASN][1000 genomes]
rs10810171	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1328004	0.80[ASN][1000 genomes]
rs4142079	0.81[CEU][hapmap];0.81[JPT][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4741390	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7851867	0.81[ASN][1000 genomes]
rs963659	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831517	chr9:14512924-14738206	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv892604	chr9:14519301-14559910	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14528000-14531400	Active TSS	K562	blood
2	chr9:14528000-14531800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:14529000-14532200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:14529200-14533000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:14529400-14531600	Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr9:14529400-14531800	Weak transcription	Fetal Heart	heart
7	chr9:14529400-14532200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:14529400-14532600	Weak transcription	Fetal Kidney	kidney
9	chr9:14529400-14534000	Weak transcription	Right Atrium	heart
10	chr9:14529400-14534000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:14529800-14535600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:14530200-14532000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:14530200-14532600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr9:14530200-14533600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:14530200-14534400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:14530200-14535000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:14530200-14535600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:14530400-14532000	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr9:14530400-14532600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr9:14530400-14532800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr9:14530600-14532000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:14530600-14532000	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr9:14530600-14532200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:14530600-14532800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:14530600-14532800	Enhancers	Fetal Brain Male	brain
26	chr9:14530800-14531400	Active TSS	Fetal Brain Female	brain
27	chr9:14530800-14531800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr9:14530800-14532200	Weak transcription	HSMMtube	muscle
29	chr9:14531000-14531400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:14531000-14531400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:14531000-14533200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:14531000-14534000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr9:14531200-14532200	Active TSS	Brain Anterior Caudate	brain

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