Variant report

Variant	rs10961915
Chromosome Location	chr9:15208023-15208024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15206033..15209018-chr9:15421767..15424540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164975	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10217576	0.82[EUR][1000 genomes]
rs10961918	0.87[EUR][1000 genomes]
rs10961923	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs10961924	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10961941	1.00[CHB][hapmap]
rs12005971	1.00[CHB][hapmap]
rs1215123	0.84[EUR][1000 genomes]
rs1215124	0.81[EUR][1000 genomes]
rs12338912	1.00[CHB][hapmap]
rs12343442	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs12345299	1.00[JPT][hapmap]
rs12377170	0.89[CEU][hapmap]
rs2146864	0.83[EUR][1000 genomes]
rs2488958	0.82[EUR][1000 genomes]
rs480635	0.84[EUR][1000 genomes]
rs513270	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs654202	0.84[EUR][1000 genomes]
rs68152174	0.89[EUR][1000 genomes]
rs7033069	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:15159000-15211200	Weak transcription	HMEC	breast
3	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:15166200-15211200	Weak transcription	NH-A	brain
5	chr9:15170400-15211000	Weak transcription	Brain Angular Gyrus	brain
6	chr9:15171000-15228600	Weak transcription	Stomach Mucosa	stomach
7	chr9:15177000-15213000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:15179400-15221000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:15181000-15211800	Weak transcription	NHLF	lung
10	chr9:15182000-15211400	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:15182200-15211400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:15182200-15229200	Weak transcription	Gastric	stomach
13	chr9:15185600-15225800	Weak transcription	Pancreas	Pancrea
14	chr9:15188400-15211400	Weak transcription	Fetal Kidney	kidney
15	chr9:15191800-15211200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:15192200-15229200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:15192400-15223200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:15192600-15211000	Weak transcription	NHDF-Ad	bronchial
19	chr9:15192600-15211200	Weak transcription	Adipose Nuclei	Adipose
20	chr9:15192600-15211400	Weak transcription	Brain Anterior Caudate	brain
21	chr9:15192600-15213000	Weak transcription	Small Intestine	intestine
22	chr9:15193200-15212200	Weak transcription	Aorta	Aorta
23	chr9:15193400-15249600	Weak transcription	Colonic Mucosa	Colon
24	chr9:15196000-15214200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:15196600-15211000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:15196800-15211400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr9:15197000-15211000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:15197000-15213000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:15197200-15211400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:15197200-15223000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr9:15197200-15225000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr9:15197400-15209800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:15200200-15211200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:15202000-15211000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr9:15202000-15217400	Weak transcription	Esophagus	oesophagus
36	chr9:15202600-15210800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr9:15203200-15208400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr9:15203400-15211400	Strong transcription	Primary T cells from cord blood	blood
39	chr9:15204000-15209600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr9:15204000-15210600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr9:15204200-15208600	Weak transcription	Liver	Liver
42	chr9:15204200-15211000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:15204600-15208400	Strong transcription	Fetal Intestine Small	intestine
44	chr9:15204600-15211200	Weak transcription	Left Ventricle	heart
45	chr9:15205200-15211400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr9:15205800-15208600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr9:15205800-15211200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr9:15206000-15208400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr9:15206000-15208600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr9:15206000-15209400	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links