Variant report

Variant	rs10961918
Chromosome Location	chr9:15218099-15218100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15218010..15219971-chr9:15288500..15290967,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10217576	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10961915	0.87[EUR][1000 genomes]
rs10961923	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10961924	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1215123	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1215124	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12343442	0.85[EUR][1000 genomes]
rs12377170	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2146864	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2488958	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs480635	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs513270	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs654202	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs68152174	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7033069	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:15171000-15228600	Weak transcription	Stomach Mucosa	stomach
3	chr9:15179400-15221000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:15182200-15229200	Weak transcription	Gastric	stomach
5	chr9:15185600-15225800	Weak transcription	Pancreas	Pancrea
6	chr9:15192200-15229200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:15192400-15223200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:15193400-15249600	Weak transcription	Colonic Mucosa	Colon
9	chr9:15197200-15223000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:15197200-15225000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr9:15206000-15220800	Weak transcription	Lung	lung
12	chr9:15206000-15222800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:15206000-15223000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:15206000-15229200	Weak transcription	Ovary	ovary
15	chr9:15206400-15221000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:15207600-15225600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr9:15207800-15223000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:15209600-15223000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr9:15210000-15231800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr9:15210600-15226200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr9:15211000-15222400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:15211200-15222000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:15211400-15222600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr9:15211400-15222600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:15211400-15229000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:15211400-15229000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr9:15211600-15223200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:15211600-15224600	Weak transcription	NHEK	skin
29	chr9:15211600-15226600	Weak transcription	HMEC	breast
30	chr9:15211800-15220800	Weak transcription	Adipose Nuclei	Adipose
31	chr9:15212000-15218800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr9:15212000-15219400	Weak transcription	Fetal Kidney	kidney
33	chr9:15212000-15220200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:15212000-15222400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:15212000-15222400	Weak transcription	Fetal Stomach	stomach
36	chr9:15212000-15222800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr9:15212000-15224800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr9:15212000-15225400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:15212200-15220200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:15212200-15220800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr9:15212400-15220800	Weak transcription	Aorta	Aorta
42	chr9:15212400-15223000	Weak transcription	Fetal Lung	lung
43	chr9:15212400-15225600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:15212800-15226000	Weak transcription	Liver	Liver
45	chr9:15213000-15218400	Strong transcription	Primary T cells from cord blood	blood
46	chr9:15213400-15222600	Weak transcription	HepG2	liver
47	chr9:15213600-15218800	Weak transcription	Small Intestine	intestine
48	chr9:15213600-15225800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr9:15214200-15219200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr9:15214800-15222200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links