Variant report

Variant	rs10962149
Chromosome Location	chr9:15773953-15773954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 252 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:245)

rs_ID	r²[population]
rs1009468	1.00[CHB][hapmap]
rs10481557	0.92[CEU][hapmap]
rs10732335	0.84[EUR][1000 genomes]
rs10733295	0.81[CEU][hapmap]
rs10733301	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10733302	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10733305	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs10738404	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10738405	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10738406	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10738411	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10738413	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10738417	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs10756674	0.92[CEU][hapmap]
rs10756677	0.93[CEU][hapmap];0.88[CHB][hapmap]
rs10756679	0.89[CEU][hapmap]
rs10756686	0.89[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs10756687	0.92[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap]
rs10756688	0.92[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap]
rs10756689	0.93[CEU][hapmap];0.89[CHB][hapmap]
rs10756690	0.93[CEU][hapmap];0.84[CHB][hapmap]
rs10756692	0.82[EUR][1000 genomes]
rs10756693	0.81[EUR][1000 genomes]
rs10756694	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10756695	0.82[EUR][1000 genomes]
rs10756696	0.82[EUR][1000 genomes]
rs10756697	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10756703	0.90[EUR][1000 genomes]
rs10756704	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10756713	0.80[EUR][1000 genomes]
rs10756714	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs10756715	0.89[CEU][hapmap]
rs10810401	0.93[CEU][hapmap]
rs10810402	0.89[CEU][hapmap]
rs10810408	0.92[CEU][hapmap]
rs10810427	0.84[CHB][hapmap]
rs10810428	0.92[CEU][hapmap];0.84[CHB][hapmap];0.80[AMR][1000 genomes]
rs10810429	0.83[CHB][hapmap]
rs10810431	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810432	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810433	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810434	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10810435	0.82[EUR][1000 genomes]
rs10810436	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10810438	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10810439	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs10810440	0.88[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10810442	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10810446	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs10810448	0.83[EUR][1000 genomes]
rs10810450	0.87[EUR][1000 genomes]
rs10810451	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10810455	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs10810461	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs10810462	0.86[CEU][hapmap]
rs10962098	0.93[CEU][hapmap];0.89[CHB][hapmap]
rs10962099	0.93[CEU][hapmap];0.89[CHB][hapmap]
rs10962110	0.89[CEU][hapmap]
rs10962124	0.82[EUR][1000 genomes]
rs10962125	0.81[ASN][1000 genomes]
rs10962126	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10962142	0.81[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10962146	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10962147	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10962151	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10962152	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10962153	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962156	0.83[CEU][hapmap]
rs10962157	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10962158	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10962163	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10962167	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10962170	1.00[CHB][hapmap]
rs11562188	0.86[EUR][1000 genomes]
rs1169478	0.84[CHB][hapmap]
rs1169479	0.94[CHB][hapmap]
rs1169480	0.89[CHB][hapmap]
rs11789563	0.84[EUR][1000 genomes]
rs11791627	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12057012	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12340969	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs12341679	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12346205	0.85[EUR][1000 genomes]
rs12349323	0.81[ASN][1000 genomes]
rs12349973	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12377371	0.89[CHB][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12378499	0.83[CEU][hapmap]
rs12552653	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12553816	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1328288	1.00[CHB][hapmap]
rs13283620	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13287834	0.83[CEU][hapmap]
rs1341734	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1355171	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs1355173	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1359953	0.89[CHB][hapmap]
rs1396706	0.88[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1396707	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1396708	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1509310	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1533040	0.92[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs1539171	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1539172	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs1539173	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs1553728	0.89[CEU][hapmap]
rs1572978	1.00[CHB][hapmap]
rs1592099	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs169342	0.89[CHB][hapmap]
rs183928	0.89[CHB][hapmap]
rs1891212	0.84[CHB][hapmap]
rs1970497	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1984246	0.89[CHB][hapmap]
rs2055772	0.92[CEU][hapmap]
rs2066292	0.94[CHB][hapmap]
rs2096121	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2105315	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2105317	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2105318	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2105319	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2136355	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2149231	0.89[CHB][hapmap]
rs2153725	1.00[CHB][hapmap]
rs2153726	1.00[CHB][hapmap]
rs2153727	1.00[CHB][hapmap]
rs2175082	0.85[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2185663	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs2185665	1.00[CHB][hapmap]
rs2211323	0.93[EUR][1000 genomes]
rs2382534	0.89[CEU][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2382540	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs2382553	1.00[CHB][hapmap]
rs276435	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs276436	0.89[CHB][hapmap]
rs2794634	1.00[CHB][hapmap]
rs2794636	1.00[CHB][hapmap]
rs2891002	0.87[EUR][1000 genomes]
rs2891007	0.80[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs2987069	0.89[CHB][hapmap]
rs2987070	1.00[CHB][hapmap]
rs2987071	1.00[CHB][hapmap]
rs2987072	1.00[CHB][hapmap]
rs3008686	1.00[CHB][hapmap]
rs34700988	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs36013000	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4146290	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4146291	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4339736	0.80[AMR][1000 genomes]
rs451878	0.81[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap]
rs4740615	0.92[CEU][hapmap]
rs4740619	0.92[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs4740624	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs4740625	0.85[EUR][1000 genomes]
rs4740626	0.84[EUR][1000 genomes]
rs4740627	0.86[EUR][1000 genomes]
rs4740628	0.89[CEU][hapmap]
rs4741519	0.93[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap]
rs4741528	0.92[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap]
rs4741534	0.89[CEU][hapmap];0.82[CHB][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4741535	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs4741542	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4961713	0.85[EUR][1000 genomes]
rs58517712	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59761231	0.81[AFR][1000 genomes]
rs62571268	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6474931	0.93[CEU][hapmap];0.84[CHB][hapmap]
rs6474944	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs6474945	0.93[CEU][hapmap];0.83[CHB][hapmap]
rs6474953	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6474954	0.89[CEU][hapmap];0.82[CHB][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6474955	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6474962	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6474963	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6474964	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6474965	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6474966	0.81[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6474974	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7018872	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019143	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7019205	1.00[CHB][hapmap]
rs7019323	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7019430	0.81[AMR][1000 genomes]
rs7019851	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7022810	0.83[AFR][1000 genomes]
rs7023275	0.81[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap]
rs7024640	0.89[CEU][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7025420	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7025669	0.93[CEU][hapmap];0.89[CHB][hapmap]
rs7027202	0.89[CHB][hapmap]
rs7028999	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7032457	1.00[CHB][hapmap]
rs7032634	1.00[CHB][hapmap]
rs7032755	0.85[CEU][hapmap];0.89[JPT][hapmap]
rs7034484	0.87[CHB][hapmap]
rs7034781	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7036172	0.93[CEU][hapmap]
rs7036674	0.92[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs7036775	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7043770	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs7045018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047045	1.00[CHB][hapmap]
rs7049176	0.80[EUR][1000 genomes]
rs7389629	0.93[CEU][hapmap]
rs7466716	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7466717	0.85[EUR][1000 genomes]
rs7467156	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7467207	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs770191	1.00[CHB][hapmap]
rs770211	1.00[CHB][hapmap]
rs770213	1.00[CHB][hapmap]
rs770215	0.89[CHB][hapmap]
rs7847144	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7853744	1.00[CHB][hapmap]
rs7855235	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7859780	0.93[CEU][hapmap]
rs7860024	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7860528	0.86[CEU][hapmap]
rs7860755	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7860869	0.88[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7861004	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7861802	0.80[EUR][1000 genomes]
rs7863088	0.92[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs7866641	1.00[CHB][hapmap]
rs7868779	0.82[AMR][1000 genomes]
rs7869624	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7872912	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7873776	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9298738	1.00[CHB][hapmap]
rs9298739	1.00[CHB][hapmap]
rs9298740	1.00[CHB][hapmap]
rs9298741	1.00[CHB][hapmap]
rs9406537	1.00[CHB][hapmap]
rs9406542	1.00[CHB][hapmap]
rs9407648	1.00[CHB][hapmap]
rs9407649	1.00[CHB][hapmap]
rs9407650	1.00[CHB][hapmap]
rs9407651	1.00[CHB][hapmap]
rs9407652	1.00[CHB][hapmap]
rs9407654	1.00[CHB][hapmap]
rs9407657	1.00[CHB][hapmap]
rs9407661	1.00[CHB][hapmap]
rs9407662	1.00[CHB][hapmap]
rs950234	0.87[EUR][1000 genomes]
rs955369	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9650685	0.82[EUR][1000 genomes]
rs9886731	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15756200-15790800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15759200-15784400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:15763600-15774400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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