Variant report

Variant	rs10962425
Chromosome Location	chr9:16462422-16462423
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10115714	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10115759	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10810564	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16457400-16462600	Enhancers	GM12878-XiMat	blood
2	chr9:16457600-16463200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:16457800-16493400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:16458000-16470400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16458400-16463000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:16459600-16470800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:16459600-16482400	Weak transcription	A549	lung
8	chr9:16459600-16499800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:16459600-16500000	Weak transcription	NHLF	lung
10	chr9:16459800-16462800	Weak transcription	HSMMtube	muscle
11	chr9:16460600-16463200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:16460600-16463200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr9:16460800-16463200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr9:16460800-16485400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:16461000-16462800	Enhancers	Fetal Thymus	thymus
16	chr9:16461000-16463000	Enhancers	Rectal Smooth Muscle	rectum
17	chr9:16461000-16463200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr9:16461200-16463200	Enhancers	Colon Smooth Muscle	Colon
19	chr9:16461400-16463200	Enhancers	Fetal Stomach	stomach
20	chr9:16461400-16463200	Enhancers	Ovary	ovary
21	chr9:16461600-16463000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr9:16461600-16463200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr9:16461800-16462800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr9:16461800-16462800	Enhancers	H9 Cell Line	embryonic stem cell
25	chr9:16462000-16462600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:16462000-16463000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:16462000-16463800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr9:16462000-16470600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:16462000-16476400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr9:16462200-16470400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:16462200-16474000	Weak transcription	Fetal Lung	lung
32	chr9:16462400-16463000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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