Variant report

Variant	rs10962465
Chromosome Location	chr9:16506098-16506099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10119373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123825	0.87[AFR][1000 genomes]
rs10962455	0.82[YRI][hapmap]
rs10962460	1.00[AMR][1000 genomes]
rs28464772	0.82[AFR][1000 genomes]
rs28600792	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv892646	chr9:16476144-16514375	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv892647	chr9:16476144-16521534	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv466265	chr9:16484731-16516941	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
8	nsv613670	chr9:16484731-16516941	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16483200-16513600	Weak transcription	Psoas Muscle	Psoas
2	chr9:16495200-16509800	Weak transcription	Aorta	Aorta
3	chr9:16500000-16506400	Enhancers	HUVEC	blood vessel
4	chr9:16500200-16506600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:16500400-16514000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:16502200-16510000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:16502200-16510000	Weak transcription	HMEC	breast
8	chr9:16502400-16509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:16503600-16506400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:16503800-16506600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:16504000-16506200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:16504000-16506400	Enhancers	Hela-S3	cervix
13	chr9:16504000-16506400	Enhancers	NHLF	lung
14	chr9:16504000-16507000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:16504600-16506200	Enhancers	Fetal Stomach	stomach
16	chr9:16504600-16506400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:16504600-16506600	Enhancers	Fetal Lung	lung
18	chr9:16504800-16506200	Enhancers	HSMM	muscle
19	chr9:16505000-16506400	Enhancers	Fetal Kidney	kidney
20	chr9:16505000-16507000	Enhancers	Placenta	Placenta
21	chr9:16505200-16506200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:16505200-16506400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:16505400-16506400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:16505400-16506400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr9:16505400-16506600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr9:16505400-16510000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:16505400-16510200	Weak transcription	NHEK	skin
28	chr9:16505400-16514000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr9:16505600-16506200	Enhancers	NH-A	brain
30	chr9:16505600-16506400	Enhancers	A549	lung
31	chr9:16505600-16506400	Enhancers	Osteobl	bone
32	chr9:16505600-16507000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:16505600-16509200	Weak transcription	Ovary	ovary
34	chr9:16505600-16510000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:16505600-16510000	Weak transcription	HSMMtube	muscle
36	chr9:16505800-16506200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:16505800-16506400	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr9:16505800-16510000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr9:16506000-16506400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:16506000-16507000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr9:16506000-16509400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr9:16506000-16509400	Weak transcription	Colon Smooth Muscle	Colon
43	chr9:16506000-16509800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr9:16506000-16509800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:16506000-16509800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:16506000-16509800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:16506000-16509800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr9:16506000-16509800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr9:16506000-16510000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr9:16506000-16513600	Weak transcription	H1 Cell Line	embryonic stem cell

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