Variant report

Variant	rs10962473
Chromosome Location	chr9:16524830-16524831
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4961492	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1028923	chr9:16519711-16547863	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16515600-16532600	Weak transcription	Aorta	Aorta
2	chr9:16517200-16526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:16519600-16525000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:16520200-16535400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:16520600-16525200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:16522200-16525000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr9:16522600-16530600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:16522600-16530800	Weak transcription	Psoas Muscle	Psoas
9	chr9:16522800-16530800	Weak transcription	Ovary	ovary
10	chr9:16522800-16531800	Weak transcription	Fetal Kidney	kidney
11	chr9:16522800-16540800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:16523000-16526000	Weak transcription	NH-A	brain
13	chr9:16523000-16526200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:16523000-16526200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:16523000-16526200	Weak transcription	HMEC	breast
16	chr9:16523000-16526200	Weak transcription	NHEK	skin
17	chr9:16523000-16527400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:16523000-16530000	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:16523000-16530200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:16523000-16530600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:16523000-16535400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:16523200-16525400	Weak transcription	Fetal Lung	lung
23	chr9:16523200-16525800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:16523200-16526000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:16523200-16526000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:16523200-16526200	Weak transcription	Osteobl	bone
27	chr9:16523200-16526600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:16523200-16526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:16523200-16530400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:16523200-16530400	Weak transcription	Fetal Stomach	stomach
31	chr9:16523200-16530600	Weak transcription	HSMM	muscle
32	chr9:16523200-16530800	Weak transcription	Small Intestine	intestine
33	chr9:16523200-16530800	Weak transcription	NHLF	lung
34	chr9:16523200-16532200	Weak transcription	NHDF-Ad	bronchial
35	chr9:16524000-16525400	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr9:16524000-16525400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr9:16524000-16525800	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr9:16524000-16525800	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr9:16524000-16525800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr9:16524200-16527800	Enhancers	HUVEC	blood vessel
41	chr9:16524400-16525400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr9:16524400-16526400	Weak transcription	A549	lung
43	chr9:16524600-16525000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr9:16524600-16526800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr9:16524800-16525000	Enhancers	H1 Cell Line	embryonic stem cell
46	chr9:16524800-16525000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:16524800-16525000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:16524800-16525000	Enhancers	Lung	lung
49	chr9:16524800-16525000	Enhancers	Right Atrium	heart
50	chr9:16524800-16525200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links