Variant report

Variant	rs10974648
Chromosome Location	chr9:469725-469726
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:469654-469807	MCF-7	breast:	n/a	n/a
2	POU2F2	chr9:469724-470567	GM12878	blood:	n/a	chr9:469965-469979
3	RCOR1	chr9:469641-469762	GM12878	blood:	n/a	n/a
4	POLR2A	chr9:468277-471159	GM12878	blood:	n/a	n/a
5	POLR2A	chr9:469100-470670	GM19193	blood:	n/a	n/a
6	POLR2A	chr9:469523-470620	GM12891	blood:	n/a	n/a
7	NFATC1	chr9:469604-470151	GM12878	blood:	n/a	n/a
8	POLR2A	chr9:469575-470846	ECC-1	luminal epithelium:	n/a	n/a
9	POLR2A	chr9:468982-470600	GM12892	blood:	n/a	n/a
10	POLR2A	chr9:468799-470670	GM12892	blood:	n/a	n/a
11	POLR2A	chr9:469675-469876	K562	blood:	n/a	n/a
12	ELF1	chr9:469542-470724	MCF-7	breast:	n/a	chr9:469772-469781 chr9:470123-470132 chr9:470118-470130
13	POLR2A	chr9:469707-470723	MCF-7	breast:	n/a	n/a
14	POLR2A	chr9:469590-470667	A549	lung:	n/a	n/a
15	MAX	chr9:469644-471112	A549	lung:	n/a	n/a
16	POLR2A	chr9:469654-471048	SK-N-MC	brain:	n/a	n/a
17	POLR2A	chr9:469644-470750	GM15510	blood:	n/a	n/a
18	MAX	chr9:469600-470956	HepG2	liver:	n/a	n/a
19	POLR2A	chr9:469497-470643	GM12878	blood:	n/a	n/a
20	POLR2A	chr9:469601-470632	GM12878	blood:	n/a	n/a
21	TAF1	chr9:469694-470548	H1-hESC	embryonic stem cell:	n/a	n/a
22	SIN3A	chr9:469624-470798	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr9:469704-470643	MCF10A-Er-Src	breast:	n/a	n/a
24	FOXM1	chr9:469712-470525	GM12878	blood:	n/a	n/a
25	NRF1	chr9:469651-470628	SK-N-SH	brain:	n/a	chr9:470246-470257 chr9:470282-470293
26	NFIC	chr9:469692-470245	GM12878	blood:	n/a	n/a
27	POLR2A	chr9:469557-470589	GM12878	blood:	n/a	n/a
28	POLR2A	chr9:469160-471529	Raji	blood:	n/a	n/a
29	POLR2A	chr9:468924-470677	GM12892	blood:	n/a	n/a
30	PML	chr9:469601-470888	GM12878	blood:	n/a	n/a
31	TCF12	chr9:469609-470842	A549	lung:	n/a	n/a
32	STAT5A	chr9:469509-471039	GM12878	blood:	n/a	chr9:469685-469708 chr9:470148-470160
33	MYC	chr9:469678-470686	NB4	blood:	n/a	n/a
34	POLR2A	chr9:469703-469750	HepG2	liver:	n/a	n/a
35	POLR2A	chr9:469620-470821	MCF-7	breast:	n/a	n/a
36	POLR2A	chr9:469635-470553	GM10847	blood:	n/a	n/a
37	POLR2A	chr9:469088-470695	GM19099	blood:	n/a	n/a
38	POLR2A	chr9:468918-470573	GM12891	blood:	n/a	n/a
39	EBF1	chr9:469609-470541	GM12878	blood:	n/a	chr9:470042-470053 chr9:470042-470055
40	POLR2A	chr9:468971-470881	GM18951	blood:	n/a	n/a
41	MTA3	chr9:469599-470713	GM12878	blood:	n/a	n/a
42	MAX	chr9:469671-470743	GM12878	blood:	n/a	n/a
43	ZNF143	chr9:469638-470535	GM12878	blood:	n/a	n/a
44	POLR2A	chr9:469630-470665	GM12878	blood:	n/a	n/a
45	REST	chr9:469557-470468	H1-neurons	neurons:	n/a	n/a
46	POLR2A	chr9:468907-470707	GM12892	blood:	n/a	n/a
47	MAX	chr9:469606-470813	HepG2	liver:	n/a	n/a
48	POLR2A	chr9:468962-470807	GM18505	blood:	n/a	n/a
49	EBF1	chr9:469703-470241	GM12878	blood:	n/a	chr9:470042-470053 chr9:470042-470055
50	POLR2A	chr9:469660-470830	GM18526	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:469030..473266-chr9:476113..479118,4	MCF-7	breast:
2	chr9:469326..471004-chr9:547085..549851,2	MCF-7	breast:
3	chr9:468830..470676-chr9:503247..506779,4	MCF-7	breast:
4	chr9:468995..471572-chr9:503851..506185,2	MCF-7	breast:
5	chr9:459270..461586-chr9:468346..470515,2	MCF-7	breast:
6	chr15:65809681..65810581-chr9:469632..470519,2	NB4	blood:
7	chr1:23494875..23495400-chr9:469098..469749,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf66-2	chr9:469722-469802	ENSG00000227155.3
2	lnc-C9orf66-2	chr9:469722-469836	ENSG00000227155.3
3	lnc-C9orf66-2	chr9:469722-469802	ENSG00000227155.3

Variant related genes	Relation type
ENSG00000227155	TF binding region
KANK1	TF binding region
ENSG00000107104	Chromatin interaction
ENSG00000235330	Chromatin interaction
ENSG00000074603	Chromatin interaction
ENSG00000169641	Chromatin interaction
ENSG00000226403	Chromatin interaction
ENSG00000227155	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10758633	0.95[ASN][1000 genomes]
rs10815025	0.95[ASN][1000 genomes]
rs10815034	1.00[ASN][1000 genomes]
rs10974576	0.81[ASN][1000 genomes]
rs10974618	0.95[ASN][1000 genomes]
rs10974637	0.87[EUR][1000 genomes]
rs10974643	0.81[EUR][1000 genomes]
rs10974644	0.81[EUR][1000 genomes]
rs7853027	0.81[ASN][1000 genomes]
rs7867447	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7869992	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:114 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv2752306	chr9:46431-499586	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1033067	chr9:46587-499586	Bivalent Enhancer Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1018439	chr9:46587-518103	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1029333	chr9:110685-495126	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1021131	chr9:199707-503337	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv469507	chr9:199707-544450	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv1030075	chr9:203310-496213	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv530915	chr9:203993-500725	Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv612996	chr9:204201-470086	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv1034457	chr9:209254-482833	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv1015681	chr9:209254-503325	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv539826	chr9:209254-503325	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
18	nsv1031205	chr9:209254-518295	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv539827	chr9:209254-518295	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
21	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
22	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
23	nsv1031505	chr9:214166-472285	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv539842	chr9:214166-472285	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
25	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
26	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
27	nsv1034686	chr9:214366-486131	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
28	nsv539858	chr9:214366-486131	Genic enhancers Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
29	nsv1018146	chr9:214366-522996	Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
30	nsv539859	chr9:214366-522996	Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
31	nsv1031297	chr9:214366-659340	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
32	nsv539860	chr9:214366-659340	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
33	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
34	nsv1035041	chr9:222282-654518	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
35	nsv539877	chr9:222282-654518	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
36	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
37	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
38	nsv918092	chr9:229197-502446	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
39	nsv1027206	chr9:236075-499586	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
40	nsv1018835	chr9:236075-526981	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
41	nsv471267	chr9:237988-500979	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
42	nsv612997	chr9:238389-510546	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
43	nsv466044	chr9:238389-634160	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
44	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
45	nsv612999	chr9:290670-526772	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
46	nsv1019991	chr9:295237-533926	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
47	nsv429976	chr9:302324-678088	Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
48	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
50	nsv531561	chr9:313298-472145	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:446600-469800	Weak transcription	Lung	lung
2	chr9:465800-469800	Weak transcription	Spleen	Spleen
3	chr9:468400-469800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:468600-469800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr9:468600-470000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:468600-470000	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr9:468600-471000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:468800-469800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:468800-470000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr9:468800-470000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr9:468800-470000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:468800-470000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr9:468800-470000	Flanking Active TSS	NHEK	skin
14	chr9:468800-470400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr9:468800-470800	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr9:468800-471000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr9:469000-469800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr9:469000-469800	Flanking Active TSS	Colon Smooth Muscle	Colon
19	chr9:469000-470000	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr9:469000-470000	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr9:469000-470000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr9:469000-470000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr9:469000-470400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:469000-470400	Active TSS	NHDF-Ad	bronchial
25	chr9:469000-470600	Active TSS	Fetal Intestine Large	intestine
26	chr9:469000-470600	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr9:469000-471000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr9:469200-469800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:469200-470000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr9:469200-470000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr9:469200-470000	Flanking Active TSS	Fetal Muscle Leg	muscle
32	chr9:469200-470000	Flanking Active TSS	Fetal Thymus	thymus
33	chr9:469200-470400	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr9:469200-470400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr9:469200-470400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr9:469200-470600	Active TSS	Brain Germinal Matrix	brain
37	chr9:469200-470600	Active TSS	Esophagus	oesophagus
38	chr9:469200-470800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:469200-470800	Active TSS	Aorta	Aorta
40	chr9:469200-470800	Active TSS	Brain Anterior Caudate	brain
41	chr9:469200-470800	Active TSS	HSMM	muscle
42	chr9:469200-471000	Flanking Active TSS	Fetal Muscle Trunk	muscle
43	chr9:469200-471400	Flanking Active TSS	Dnd41	blood
44	chr9:469400-469800	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr9:469400-470000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr9:469400-470000	Flanking Active TSS	Placenta	Placenta
47	chr9:469400-470400	Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr9:469400-470400	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr9:469400-470400	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr9:469400-470400	Active TSS	HepG2	liver

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