Variant report

Variant	rs10974872
Chromosome Location	chr9:503337-503338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:503329-503414	MCF-7	breast:	n/a	n/a
2	CTCF	chr9:503215-505107	A549	lung:	n/a	chr9:504426-504439 chr9:504065-504073 chr9:504969-504985 chr9:504060-504073
3	CTCF	chr9:503260-503410	WERI-Rb-1	eye:	n/a	n/a
4	CTCF	chr9:503324-503378	MCF-7	breast:	n/a	n/a
5	CTCF	chr9:503240-503390	RPTEC	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:494848..496689-chr9:501659..504144,2	MCF-7	breast:
2	chr9:490052..492255-chr9:502875..504712,2	MCF-7	breast:
3	chr9:468830..470676-chr9:503247..506779,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf66-7	chr9:503057-504746	NONHSAT129929

Variant related genes	Relation type
KANK1	TF binding region
ENSG00000227155	Chromatin interaction
ENSG00000107104	Chromatin interaction

Extended variants
information (count: 178 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10116973	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815100	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815118	0.83[ASW][hapmap];1.00[CEU][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10815120	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10815127	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10815128	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10974840	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974841	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974842	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974844	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974855	0.88[EUR][1000 genomes]
rs10974864	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10974881	0.95[EUR][1000 genomes]
rs10974929	0.93[EUR][1000 genomes]
rs10974930	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974931	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10974932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10975021	1.00[JPT][hapmap]
rs12002163	0.98[EUR][1000 genomes]
rs12002448	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335596	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335637	0.88[EUR][1000 genomes]
rs12335857	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335985	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339230	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339635	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340945	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342157	1.00[ASN][1000 genomes]
rs12342353	0.95[EUR][1000 genomes]
rs12342407	0.83[EUR][1000 genomes]
rs12343458	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12344733	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345050	0.95[EUR][1000 genomes]
rs12345253	0.95[EUR][1000 genomes]
rs12347628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347670	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347751	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352274	1.00[JPT][hapmap]
rs12352750	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352940	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12353166	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410966	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410967	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917912	0.87[TSI][hapmap]
rs16919226	1.00[TSI][hapmap]
rs1928415	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2885067	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34739276	1.00[ASN][1000 genomes]
rs4548235	0.95[EUR][1000 genomes]
rs55877464	0.98[EUR][1000 genomes]
rs56072524	1.00[ASN][1000 genomes]
rs56126601	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58134599	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58370292	0.93[EUR][1000 genomes]
rs58598003	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58920137	0.95[EUR][1000 genomes]
rs60064943	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60919895	1.00[ASN][1000 genomes]
rs62529929	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62531460	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62531463	0.91[EUR][1000 genomes]
rs6476918	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7025946	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7036591	1.00[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7038982	1.00[JPT][hapmap]
rs7047249	1.00[ASN][1000 genomes]
rs73639561	0.91[EUR][1000 genomes]
rs7846750	0.98[EUR][1000 genomes]
rs7848411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7849531	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850663	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7850873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7852911	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853150	1.00[JPT][hapmap]
rs7854730	1.00[ASN][1000 genomes]
rs7857770	0.95[EUR][1000 genomes]
rs7858791	0.88[EUR][1000 genomes]
rs7859991	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861612	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7862276	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9407294	1.00[JPT][hapmap]
rs9407296	1.00[JPT][hapmap]
rs9407298	1.00[JPT][hapmap]
rs9408613	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:91 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1018439	chr9:46587-518103	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1021131	chr9:199707-503337	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv469507	chr9:199707-544450	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1031205	chr9:209254-518295	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv539827	chr9:209254-518295	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
15	nsv1018146	chr9:214366-522996	Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
16	nsv539859	chr9:214366-522996	Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
17	nsv1031297	chr9:214366-659340	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	nsv539860	chr9:214366-659340	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
19	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
20	nsv1035041	chr9:222282-654518	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv539877	chr9:222282-654518	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
22	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
23	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
24	nsv1018835	chr9:236075-526981	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv612997	chr9:238389-510546	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
26	nsv466044	chr9:238389-634160	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
27	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
28	nsv612999	chr9:290670-526772	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
29	nsv1019991	chr9:295237-533926	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
30	nsv429976	chr9:302324-678088	Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
31	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
32	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
33	nsv533964	chr9:314969-910448	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
34	nsv1022401	chr9:319961-518103	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
35	nsv1027265	chr9:325712-517545	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
36	nsv539888	chr9:325712-517545	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
37	nsv1017197	chr9:325877-519256	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
38	nsv1029858	chr9:327139-518295	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
39	nsv1028102	chr9:327139-605908	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
40	nsv1031809	chr9:327139-715668	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
41	nsv613011	chr9:333819-635677	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
42	nsv466045	chr9:334337-543631	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
43	nsv613012	chr9:334337-543631	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
44	nsv1026342	chr9:336026-544519	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
45	nsv1017374	chr9:343870-534149	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
46	nsv539889	chr9:343870-534149	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
47	nsv466046	chr9:344229-543631	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
48	nsv613013	chr9:344229-543631	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
49	nsv931598	chr9:349034-862771	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
50	nsv1027367	chr9:366387-697983	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:497400-503400	Weak transcription	Pancreas	Pancrea
2	chr9:502600-503400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:502800-503800	Enhancers	Stomach Mucosa	stomach
4	chr9:503000-503400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr9:503000-503400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr9:503000-503600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:503000-504200	Flanking Active TSS	Fetal Heart	heart
8	chr9:503200-503400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr9:503200-503400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:503200-503400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr9:503200-503400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr9:503200-503400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:503200-503400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr9:503200-503400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:503200-503400	Flanking Active TSS	Colon Smooth Muscle	Colon
16	chr9:503200-503400	Enhancers	Fetal Intestine Small	intestine
17	chr9:503200-503400	Bivalent Enhancer	Fetal Thymus	thymus
18	chr9:503200-503400	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
19	chr9:503200-503400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr9:503200-503400	Enhancers	Stomach Smooth Muscle	stomach
21	chr9:503200-503400	Enhancers	A549	lung
22	chr9:503200-503400	Enhancers	Hela-S3	cervix
23	chr9:503200-503600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr9:503200-503600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:503200-503600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
26	chr9:503200-503600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr9:503200-503600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr9:503200-503600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:503200-503600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr9:503200-503600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:503200-503600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
32	chr9:503200-503600	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr9:503200-503600	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr9:503200-503600	Enhancers	Right Ventricle	heart
35	chr9:503200-503800	Enhancers	Gastric	stomach
36	chr9:503200-503800	Bivalent Enhancer	HepG2	liver
37	chr9:503200-504000	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
38	chr9:503200-504200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr9:503200-504200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr9:503200-504200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:503200-504200	Flanking Active TSS	Colonic Mucosa	Colon
42	chr9:503200-504400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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