Variant report

Variant	rs10975496
Chromosome Location	chr9:631605-631606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 224 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10115825	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10116503	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10122327	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10124848	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10156581	0.91[EUR][1000 genomes]
rs10156671	0.91[EUR][1000 genomes]
rs10217450	0.85[ASN][1000 genomes]
rs1022829	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs1022831	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs1022832	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs10491595	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10491596	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs10491599	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs10815316	1.00[JPT][hapmap]
rs10815354	0.83[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10815355	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10815367	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10815369	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10815371	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10815372	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10815373	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10815384	1.00[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10815385	1.00[CEU][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10815386	1.00[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10815387	1.00[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10815389	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10815404	0.92[EUR][1000 genomes]
rs10975295	0.82[JPT][hapmap]
rs10975449	0.85[CEU][hapmap]
rs10975462	0.85[CEU][hapmap]
rs10975466	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10975476	0.91[EUR][1000 genomes]
rs10975478	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10975480	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10975482	0.80[EUR][1000 genomes]
rs10975485	0.91[ASN][1000 genomes]
rs10975486	0.91[EUR][1000 genomes]
rs10975492	0.89[EUR][1000 genomes]
rs10975493	0.93[EUR][1000 genomes]
rs10975502	1.00[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10975503	0.94[CEU][hapmap];0.81[MEX][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10975505	1.00[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs10975506	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10975510	0.90[EUR][1000 genomes]
rs10975522	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10975559	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10975560	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10975576	0.91[EUR][1000 genomes]
rs10975657	0.80[JPT][hapmap]
rs12002249	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12056972	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12056978	0.94[EUR][1000 genomes]
rs12056988	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12057074	0.92[EUR][1000 genomes]
rs12238082	0.80[EUR][1000 genomes]
rs12238166	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12335565	0.92[ASN][1000 genomes]
rs12337054	0.92[EUR][1000 genomes]
rs12337056	0.92[EUR][1000 genomes]
rs12337061	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12338412	0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12338965	1.00[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12339054	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12341226	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12344866	0.87[CHD][hapmap]
rs12346314	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs12353073	0.84[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs12685890	0.87[CHD][hapmap]
rs16920619	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs16920641	0.82[JPT][hapmap]
rs16921323	0.83[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16921441	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs16921551	1.00[JPT][hapmap]
rs16921797	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs16921901	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs16922505	0.84[CHD][hapmap]
rs16924585	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17431629	0.94[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap]
rs2641989	0.81[CHD][hapmap]
rs28513073	0.92[EUR][1000 genomes]
rs28626827	0.92[EUR][1000 genomes]
rs28744560	0.94[EUR][1000 genomes]
rs34147505	0.83[EUR][1000 genomes]
rs35625797	0.84[ASN][1000 genomes]
rs55842631	0.86[EUR][1000 genomes]
rs56036818	0.86[EUR][1000 genomes]
rs56296348	0.86[EUR][1000 genomes]
rs56342047	0.91[ASN][1000 genomes]
rs58172099	0.93[EUR][1000 genomes]
rs58418306	0.88[ASN][1000 genomes]
rs58845489	0.91[ASN][1000 genomes]
rs59521969	0.86[EUR][1000 genomes]
rs61288977	0.92[ASN][1000 genomes]
rs62530062	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62530079	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62530087	0.82[ASN][1000 genomes]
rs62530088	0.90[EUR][1000 genomes]
rs62530090	0.91[EUR][1000 genomes]
rs62530091	0.87[EUR][1000 genomes]
rs62530109	0.86[EUR][1000 genomes]
rs62530114	0.80[EUR][1000 genomes]
rs62530115	0.80[EUR][1000 genomes]
rs62530116	0.80[EUR][1000 genomes]
rs6477084	0.84[CEU][hapmap]
rs7021495	0.84[CEU][hapmap]
rs7024722	0.89[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap]
rs7028792	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs7030653	1.00[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.93[EUR][1000 genomes]
rs7046519	0.85[CEU][hapmap]
rs72691307	0.94[EUR][1000 genomes]
rs72691308	0.94[EUR][1000 genomes]
rs7865660	0.83[EUR][1000 genomes]
rs7874205	0.94[EUR][1000 genomes]
rs9657628	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:110 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv1031297	chr9:214366-659340	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv539860	chr9:214366-659340	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv1035041	chr9:222282-654518	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	nsv539877	chr9:222282-654518	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
15	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
16	nsv466044	chr9:238389-634160	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
17	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
18	nsv429976	chr9:302324-678088	Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv533964	chr9:314969-910448	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
22	nsv1031809	chr9:327139-715668	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
23	nsv613011	chr9:333819-635677	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
24	nsv931598	chr9:349034-862771	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
25	nsv1027367	chr9:366387-697983	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
26	nsv1027550	chr9:366387-715668	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
27	nsv530918	chr9:381430-839211	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
28	esv2752307	chr9:382810-733212	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
29	nsv891974	chr9:395025-685819	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
30	esv2829905	chr9:395025-712156	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
31	nsv1021206	chr9:399146-911325	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
32	nsv891977	chr9:419399-684160	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
33	nsv1029985	chr9:459016-813600	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
34	nsv539895	chr9:459016-813600	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
35	nsv916532	chr9:459131-862833	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
36	nsv1025492	chr9:478813-1157169	Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
37	nsv539897	chr9:478813-1157169	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
38	nsv891980	chr9:484850-686301	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
39	nsv1026988	chr9:495809-827580	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
40	nsv539898	chr9:495809-827580	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
41	nsv891983	chr9:510546-634160	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
42	nsv891984	chr9:510546-648943	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
43	nsv1017472	chr9:518235-742803	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
44	nsv1023357	chr9:518235-775704	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
45	esv2758175	chr9:524413-853033	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
46	esv2759655	chr9:524413-853033	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
47	nsv427836	chr9:524413-853033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
48	nsv1033964	chr9:525037-816742	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
49	nsv1019676	chr9:525752-804603	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
50	nsv1021488	chr9:525752-813181	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10975496	ANKRD15	Cis_1M	lymphoblastoid	RTeQTL
rs10975496	OR52H1	trans	cerebellum	SCAN
rs10975496	KANK1	cis	cerebellum	SCAN

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:616800-655800	Weak transcription	Pancreas	Pancrea
2	chr9:621800-641800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:626400-641400	Weak transcription	Primary T cells from cord blood	blood
4	chr9:628400-633800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:628400-635000	Weak transcription	Right Atrium	heart
6	chr9:628400-638200	Weak transcription	Right Ventricle	heart
7	chr9:628800-649400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr9:629200-632400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:630600-632000	Enhancers	Thymus	Thymus
10	chr9:630600-632200	Flanking Active TSS	Dnd41	blood
11	chr9:630800-631800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:630800-632000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr9:630800-632000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr9:630800-632200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:630800-632200	Enhancers	A549	lung
16	chr9:630800-632200	Enhancers	NHEK	skin
17	chr9:631000-632000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr9:631000-632000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr9:631000-632000	Enhancers	NHLF	lung
20	chr9:631000-632200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:631000-632200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr9:631000-632200	Enhancers	Fetal Heart	heart
23	chr9:631000-632200	Enhancers	NHDF-Ad	bronchial
24	chr9:631000-632200	Enhancers	Osteobl	bone
25	chr9:631000-632400	Enhancers	HMEC	breast
26	chr9:631000-632600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:631000-632800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr9:631200-631800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr9:631200-631800	Enhancers	Fetal Thymus	thymus
30	chr9:631200-632000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr9:631200-632000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:631200-632400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:631400-631800	Enhancers	Primary T cells fromperipheralblood	blood
34	chr9:631400-631800	Enhancers	Gastric	stomach
35	chr9:631400-632000	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr9:631400-632000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr9:631400-632000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr9:631400-632000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:631400-632000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:631400-632000	Enhancers	NH-A	brain
41	chr9:631400-632200	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr9:631600-631800	Enhancers	HSMMtube	muscle
43	chr9:631600-632000	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr9:631600-632000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:631600-632000	Enhancers	HepG2	liver
46	chr9:631600-632200	Enhancers	HSMM	muscle
47	chr9:631600-633200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr9:631600-634800	Weak transcription	Left Ventricle	heart

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