Variant report

Variant	rs10979018
Chromosome Location	chr9:110469181-110469182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110251038..110252805-chr9:110468432..110471382,2	MCF-7	breast:
2	chr9:110252486..110254800-chr9:110467929..110470503,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10816561	1.00[ASW][hapmap]
rs12347172	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2417804	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110464200-110469800	Weak transcription	Spleen	Spleen
2	chr9:110466200-110469600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:110466200-110469800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:110466200-110474200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:110466400-110469800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr9:110466800-110471200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:110467000-110471400	Enhancers	NHEK	skin
8	chr9:110467200-110475800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:110467200-110475800	Enhancers	HMEC	breast
10	chr9:110467400-110470800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:110467400-110471400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:110467400-110471800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:110467600-110469600	Enhancers	HSMM	muscle
14	chr9:110467600-110470600	Enhancers	Osteobl	bone
15	chr9:110467600-110471200	Enhancers	NHDF-Ad	bronchial
16	chr9:110468000-110469200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:110468200-110470800	Enhancers	Fetal Muscle Leg	muscle
18	chr9:110468200-110470800	Enhancers	NHLF	lung
19	chr9:110468200-110471400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:110468400-110473400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:110468400-110473400	Weak transcription	Fetal Intestine Small	intestine
22	chr9:110468400-110473600	Weak transcription	Fetal Intestine Large	intestine
23	chr9:110468800-110471200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:110469000-110470000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:110469000-110470600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:110469000-110470600	Enhancers	HSMMtube	muscle
27	chr9:110469000-110473400	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links