Variant report

Variant	rs10979021
Chromosome Location	chr9:110470632-110470633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110251038..110252805-chr9:110468432..110471382,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10117620	1.00[AFR][1000 genomes]
rs10123702	1.00[AFR][1000 genomes]
rs10123747	1.00[AFR][1000 genomes]
rs10816558	1.00[AFR][1000 genomes]
rs10816561	1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110466200-110474200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:110466800-110471200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:110467000-110471400	Enhancers	NHEK	skin
4	chr9:110467200-110475800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:110467200-110475800	Enhancers	HMEC	breast
6	chr9:110467400-110470800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:110467400-110471400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:110467400-110471800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:110467600-110471200	Enhancers	NHDF-Ad	bronchial
10	chr9:110468200-110470800	Enhancers	Fetal Muscle Leg	muscle
11	chr9:110468200-110470800	Enhancers	NHLF	lung
12	chr9:110468200-110471400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:110468400-110473400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:110468400-110473400	Weak transcription	Fetal Intestine Small	intestine
15	chr9:110468400-110473600	Weak transcription	Fetal Intestine Large	intestine
16	chr9:110468800-110471200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:110469000-110473400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr9:110469200-110471600	Enhancers	K562	blood
19	chr9:110469400-110470800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:110469600-110470800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:110469800-110471800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr9:110469800-110471800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr9:110470000-110479600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:110470600-110470800	Enhancers	Fetal Muscle Trunk	muscle
25	chr9:110470600-110470800	Enhancers	Spleen	Spleen
26	chr9:110470600-110470800	Enhancers	A549	lung
27	chr9:110470600-110471200	Enhancers	HSMM	muscle
28	chr9:110470600-110472600	Weak transcription	Osteobl	bone
29	chr9:110470600-110473200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:110470600-110473200	Weak transcription	Hela-S3	cervix
31	chr9:110470600-110473600	Weak transcription	HSMMtube	muscle
32	chr9:110470600-110473800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr9:110470600-110474600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links