Variant report

Variant	rs10979029
Chromosome Location	chr9:110500762-110500763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110498957..110503711-chr9:110512687..110515100,7	MCF-7	breast:
2	chr9:110500118..110502060-chr9:111201913..111204415,2	MCF-7	breast:
3	chr9:110500719..110502247-chr9:110502621..110504318,2	MCF-7	breast:
4	chr9:110496966..110498533-chr9:110500002..110502085,2	MCF-7	breast:
5	chr9:110249403..110253964-chr9:110500193..110503915,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12343238	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12347252	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73518922	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110495200-110501800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:110495800-110504200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:110496000-110500800	Weak transcription	Pancreas	Pancrea
4	chr9:110496000-110503200	Enhancers	Fetal Lung	lung
5	chr9:110496000-110503600	Enhancers	Ovary	ovary
6	chr9:110496000-110510800	Weak transcription	Aorta	Aorta
7	chr9:110496200-110500800	Weak transcription	Brain Anterior Caudate	brain
8	chr9:110496200-110502000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:110496200-110502400	Weak transcription	Gastric	stomach
10	chr9:110496200-110502400	Enhancers	Osteobl	bone
11	chr9:110496800-110501000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:110497000-110503000	Enhancers	NHDF-Ad	bronchial
13	chr9:110497000-110503000	Enhancers	NHLF	lung
14	chr9:110497200-110502000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:110497200-110502000	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:110497200-110506600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr9:110497200-110506800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr9:110497400-110500800	Weak transcription	Right Atrium	heart
19	chr9:110497400-110503800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:110497400-110510800	Weak transcription	Psoas Muscle	Psoas
21	chr9:110498200-110503000	Enhancers	Fetal Stomach	stomach
22	chr9:110499200-110500800	Weak transcription	Esophagus	oesophagus
23	chr9:110499400-110500800	Weak transcription	Lung	lung
24	chr9:110499400-110502800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr9:110499400-110504800	Enhancers	Fetal Muscle Trunk	muscle
26	chr9:110499600-110503000	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr9:110499600-110503400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr9:110499800-110502600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:110499800-110503400	Enhancers	HMEC	breast
30	chr9:110499800-110505200	Enhancers	Adipose Nuclei	Adipose
31	chr9:110500000-110500800	Weak transcription	Left Ventricle	heart
32	chr9:110500000-110500800	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr9:110500000-110501000	Enhancers	Brain Hippocampus Middle	brain
34	chr9:110500000-110501200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:110500000-110501200	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr9:110500000-110501200	Flanking Active TSS	NHEK	skin
37	chr9:110500000-110501400	Enhancers	Duodenum Mucosa	Duodenum
38	chr9:110500000-110502200	Enhancers	NH-A	brain
39	chr9:110500000-110504000	Enhancers	Stomach Mucosa	stomach
40	chr9:110500000-110504200	Enhancers	Fetal Muscle Leg	muscle
41	chr9:110500000-110505000	Weak transcription	Spleen	Spleen
42	chr9:110500200-110500800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr9:110500200-110501000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:110500200-110501000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:110500200-110501000	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr9:110500200-110501000	Enhancers	Small Intestine	intestine
47	chr9:110500200-110501200	Enhancers	Placenta	Placenta
48	chr9:110500200-110501400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:110500200-110501400	Enhancers	Colonic Mucosa	Colon
50	chr9:110500200-110501400	Flanking Active TSS	Hela-S3	cervix

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