Variant report

Variant	rs10984499
Chromosome Location	chr9:100715389-100715390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100713649..100719134-chr9:100743191..100747576,7	MCF-7	breast:
2	chr9:100684836..100688272-chr9:100714444..100717597,4	K562	blood:
3	chr9:100705105..100707859-chr9:100714354..100717557,3	K562	blood:
4	chr9:100713086..100729092-chr9:100738274..100752806,69	K562	blood:
5	chr9:100681885..100689095-chr9:100713866..100720156,11	MCF-7	breast:
6	chr9:100704268..100707932-chr9:100713154..100718710,6	K562	blood:
7	chr9:100683535..100689169-chr9:100714844..100718494,7	K562	blood:
8	chr9:100697884..100704099-chr9:100714128..100720073,9	K562	blood:
9	chr9:100679350..100681181-chr9:100715024..100716909,2	K562	blood:
10	chr9:100713291..100715839-chr9:100743908..100747197,3	MCF-7	breast:
11	chr9:100684440..100688898-chr9:100715006..100719142,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000136929	Chromatin interaction
ENSG00000236896	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10760021	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10760022	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10984349	0.81[ASN][1000 genomes]
rs10984361	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10984373	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10984405	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10984462	0.91[ASN][1000 genomes]
rs10984466	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10984478	0.96[ASN][1000 genomes]
rs10984484	0.96[ASN][1000 genomes]
rs10984506	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10984588	0.89[ASN][1000 genomes]
rs10984599	0.85[ASN][1000 genomes]
rs1127703	0.81[ASN][1000 genomes]
rs12235434	0.81[ASN][1000 genomes]
rs12236440	0.81[ASN][1000 genomes]
rs12237296	0.81[ASN][1000 genomes]
rs12377604	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1475695	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1475696	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17431614	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17431934	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2417577	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3183927	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3183928	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3758253	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3758254	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3780416	0.81[ASN][1000 genomes]
rs3780417	0.81[ASN][1000 genomes]
rs3780418	0.81[ASN][1000 genomes]
rs3780419	0.81[ASN][1000 genomes]
rs3780420	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3808894	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3824496	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4618817	0.89[ASN][1000 genomes]
rs4631576	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4743145	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743147	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55737216	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66990486	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67975003	0.91[ASN][1000 genomes]
rs68053069	0.91[ASN][1000 genomes]
rs7025609	0.89[ASN][1000 genomes]
rs7030887	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7030907	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72753572	0.91[ASN][1000 genomes]
rs72753587	0.91[ASN][1000 genomes]
rs755109	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7861658	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1048135	chr9:100666931-100717030	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100713600-100716800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:100713600-100716800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:100713600-100717200	Weak transcription	Thymus	Thymus
4	chr9:100713600-100724200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr9:100713800-100717000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:100713800-100718800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr9:100714800-100716600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links