Variant report

Variant	rs10984588
Chromosome Location	chr9:100733428-100733429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100732956..100734728-chr9:100818596..100820578,2	MCF-7	breast:
2	chr9:100685514..100687681-chr9:100731460..100733588,2	K562	blood:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10984297	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10984349	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10984375	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10984462	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10984478	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10984484	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10984499	0.89[ASN][1000 genomes]
rs10984599	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10984601	0.83[AMR][1000 genomes]
rs1127703	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12235434	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12236440	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12237296	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12377604	0.84[ASN][1000 genomes]
rs1475696	0.83[ASN][1000 genomes]
rs17431934	0.84[ASN][1000 genomes]
rs3780416	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3780417	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3780418	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3780419	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4498663	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4618817	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67975003	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs68053069	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7024281	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7025609	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72753548	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72753572	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72753587	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs755109	0.84[ASN][1000 genomes]
rs7864655	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100731400-100733600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:100732000-100733800	Enhancers	Primary hematopoietic stem cells	blood
3	chr9:100732200-100734600	Active TSS	Thymus	Thymus
4	chr9:100733000-100733800	Flanking Active TSS	Fetal Thymus	thymus
5	chr9:100733200-100733600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:100733200-100734200	Weak transcription	K562	blood
7	chr9:100733200-100734600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr9:100733200-100741400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr9:100733400-100735400	Enhancers	Dnd41	blood

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