Variant report

Variant	rs10984599
Chromosome Location	chr9:100736718-100736719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100726616..100730343-chr9:100734410..100737792,5	K562	blood:
2	chr9:100683244..100686160-chr9:100734474..100737493,3	MCF-7	breast:
3	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction
ENSG00000136929	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10984297	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10984349	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10984375	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10984462	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10984478	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10984484	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10984499	0.85[ASN][1000 genomes]
rs10984588	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1127703	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12235434	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12236440	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12237296	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12377604	0.80[ASN][1000 genomes]
rs17431934	0.80[ASN][1000 genomes]
rs3780416	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3780417	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3780418	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3780419	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4498663	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4618817	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67975003	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68053069	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7024281	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7025609	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72753548	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72753572	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72753587	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs755109	0.80[ASN][1000 genomes]
rs7864655	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100733200-100741400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:100734600-100741000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:100734800-100738000	Weak transcription	K562	blood
4	chr9:100734800-100740800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:100734800-100741000	Weak transcription	Fetal Thymus	thymus
6	chr9:100734800-100741000	Weak transcription	Thymus	Thymus
7	chr9:100734800-100741400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:100735800-100744800	Weak transcription	Right Atrium	heart
9	chr9:100736000-100743400	Weak transcription	Dnd41	blood

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