Variant report

Variant	rs10986439
Chromosome Location	chr9:101262400-101262401
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1000440	0.82[CHB][hapmap]
rs1000441	1.00[ASN][1000 genomes]
rs1007651	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs10521035	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10986322	0.81[MEX][hapmap]
rs10986425	0.82[CHB][hapmap]
rs10986426	0.99[ASN][1000 genomes]
rs10986436	1.00[ASN][1000 genomes]
rs16916050	1.00[CEU][hapmap]
rs16916066	1.00[CEU][hapmap]
rs16916134	1.00[CEU][hapmap]
rs16917111	1.00[CEU][hapmap]
rs2779551	0.81[MEX][hapmap];1.00[YRI][hapmap]
rs7023937	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7853536	1.00[CEU][hapmap]
rs7857375	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs870083	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs871796	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs944761	0.80[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv6630	chr9:101236324-101267349	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101247000-101263800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101248400-101264200	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101248800-101264200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101251600-101263800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:101256800-101264600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:101258200-101262600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:101258200-101262800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:101258200-101265200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:101258400-101266600	Weak transcription	Fetal Brain Female	brain
10	chr9:101258600-101262600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:101258800-101262800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:101258800-101264000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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