Variant report

Variant	rs1099247
Chromosome Location	chr4:121443066-121443067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12503624	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2390023	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2390024	0.80[EUR][1000 genomes]
rs4417992	0.80[EUR][1000 genomes]
rs6838345	0.80[EUR][1000 genomes]
rs6840226	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9998155	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv879853	chr4:121292665-121513215	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121437200-121445000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:121437600-121445000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:121439200-121445000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:121439200-121445000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:121439400-121444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:121442400-121446600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:121442600-121444000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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