Variant report

Variant	rs10994158
Chromosome Location	chr10:61792573-61792574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61624586..61625564-chr10:61792231..61793204,4	K562	blood:
2	chr10:61792166..61795045-chr10:61799901..61802727,2	K562	blood:
3	chr10:61590075..61591034-chr10:61792472..61793037,2	MCF-7	breast:
4	chr10:61624578..61625508-chr10:61792243..61793150,3	MCF-7	breast:
5	chr10:61385909..61386564-chr10:61792336..61793183,3	K562	blood:
6	chr10:61593205..61594203-chr10:61792322..61793214,2	MCF-7	breast:
7	chr10:61664172..61667857-chr10:61789387..61792774,4	MCF-7	breast:
8	chr10:61666876..61669628-chr10:61791272..61793178,2	MCF-7	breast:
9	chr10:61789509..61792729-chr10:61793326..61795751,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1049862	0.94[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs10821657	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10821658	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821659	0.95[CEU][hapmap];0.94[CHB][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11813307	0.94[CHB][hapmap];0.91[ASN][1000 genomes]
rs12357206	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs7906905	0.95[CEU][hapmap];0.94[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61783600-61801200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:61786000-61795600	Weak transcription	Placenta	Placenta
3	chr10:61786400-61815000	Weak transcription	Left Ventricle	heart
4	chr10:61788800-61792600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:61788800-61803600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:61789000-61798000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:61789000-61819200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:61789200-61793600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:61789200-61802800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:61789400-61793400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:61789400-61807600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:61789600-61802800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:61789600-61827800	Weak transcription	Fetal Brain Female	brain
14	chr10:61790000-61803400	Weak transcription	Fetal Brain Male	brain
15	chr10:61790200-61793000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:61790200-61835000	Weak transcription	Primary T cells from cord blood	blood
17	chr10:61790400-61792800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:61790400-61799600	Weak transcription	Stomach Mucosa	stomach
19	chr10:61790600-61793000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:61791000-61793000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:61791200-61792800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr10:61791200-61793000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:61791200-61793000	Enhancers	GM12878-XiMat	blood
24	chr10:61791200-61793200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr10:61791200-61803800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:61791200-61814200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr10:61791400-61792600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:61791400-61792800	Enhancers	Ovary	ovary
29	chr10:61791400-61794400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:61791600-61792800	Enhancers	Liver	Liver
31	chr10:61791600-61793000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr10:61791600-61828600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:61791800-61803400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr10:61791800-61815400	Weak transcription	Fetal Intestine Large	intestine
35	chr10:61791800-61829400	Weak transcription	Fetal Intestine Small	intestine
36	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
37	chr10:61792000-61801200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:61792000-61803000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
40	chr10:61792400-61792600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:61792400-61792600	Enhancers	Brain Angular Gyrus	brain
42	chr10:61792400-61792800	Enhancers	Fetal Lung	lung
43	chr10:61792400-61793400	Enhancers	Fetal Heart	heart

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