Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10761546	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761548	0.88[ASN][1000 genomes]
rs10821825	0.88[ASN][1000 genomes]
rs10821846	0.88[ASN][1000 genomes]
rs10821854	0.88[ASN][1000 genomes]
rs10821859	0.88[ASN][1000 genomes]
rs10994489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994492	0.90[ASN][1000 genomes]
rs12358745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16751	0.88[ASN][1000 genomes]
rs4245009	0.87[ASN][1000 genomes]
rs4268458	0.88[ASN][1000 genomes]
rs4531415	0.88[ASN][1000 genomes]
rs4550168	0.90[ASN][1000 genomes]
rs4617537	0.90[ASN][1000 genomes]
rs4935006	0.88[ASN][1000 genomes]
rs4935007	0.90[ASN][1000 genomes]
rs4935191	0.90[ASN][1000 genomes]
rs4935192	0.90[ASN][1000 genomes]
rs7089428	0.88[ASN][1000 genomes]
rs7895606	0.90[ASN][1000 genomes]
rs7913937	0.90[ASN][1000 genomes]
rs7917358	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10994504	CTSLP4	cis	Thyroid	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52549600-52562800	Weak transcription	Liver	Liver
2	chr10:52555200-52575800	Weak transcription	Pancreas	Pancrea

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