Variant report

Variant	rs10994643
Chromosome Location	chr10:52591945-52591946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10994668	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259930	0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265892	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60228766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73326765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73326767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7908964	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52565800-52592000	Weak transcription	Stomach Mucosa	stomach
2	chr10:52576800-52597200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:52581600-52595800	Weak transcription	Fetal Intestine Small	intestine
5	chr10:52584800-52594000	Weak transcription	Pancreas	Pancrea
6	chr10:52585200-52593600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:52585200-52617200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:52589000-52592800	Weak transcription	Fetal Intestine Large	intestine
9	chr10:52590600-52592800	Enhancers	Liver	Liver
10	chr10:52591400-52592200	Genic enhancers	HepG2	liver
11	chr10:52591400-52593600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr10:52591800-52592600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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