Variant report

Variant	rs10994838
Chromosome Location	chr10:52642500-52642501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10994600	0.81[AFR][1000 genomes]
rs7068127	0.89[CEU][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs7913408	0.82[ASW][hapmap];0.88[CEU][hapmap];0.84[JPT][hapmap];0.86[MKK][hapmap];0.80[TSI][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10994838	WDFY4	cis	parietal	SCAN
rs10994838	TNMD	trans	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:52622800-52643000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:52631400-52646600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:52640600-52642600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr10:52641200-52645000	Weak transcription	Pancreas	Pancrea
6	chr10:52641800-52642600	Flanking Active TSS	Liver	Liver
7	chr10:52642200-52643000	Enhancers	Fetal Intestine Large	intestine
8	chr10:52642400-52643000	Enhancers	Duodenum Mucosa	Duodenum
9	chr10:52642400-52645600	Active TSS	HepG2	liver
10	chr10:52642400-52646400	Weak transcription	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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