Variant report

Variant	rs10994856
Chromosome Location	chr10:52645248-52645249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10821871	0.83[CEU][hapmap];0.84[MEX][hapmap]
rs10821877	0.86[YRI][hapmap]
rs10821905	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821907	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994720	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[YRI][hapmap];0.97[ASN][1000 genomes]
rs10994860	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11815391	0.83[CEU][hapmap];0.84[MEX][hapmap]
rs12768968	0.83[YRI][hapmap]
rs28621957	0.97[ASN][1000 genomes]
rs35182775	0.97[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10994856	ASAH2B	cis	Esophagus Mucosa	GTEx
rs10994856	ERCC6	cis	parietal	SCAN
rs10994856	ASAH2B	cis	lung	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52631400-52646600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:52642400-52645600	Active TSS	HepG2	liver
3	chr10:52642400-52646400	Weak transcription	Small Intestine	intestine
4	chr10:52642600-52645800	Active TSS	Liver	Liver
5	chr10:52643000-52645600	Active TSS	Fetal Intestine Large	intestine
6	chr10:52643200-52645400	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr10:52643200-52645600	Active TSS	Fetal Intestine Small	intestine
8	chr10:52643400-52645400	Active TSS	Duodenum Mucosa	Duodenum
9	chr10:52643400-52646000	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr10:52643600-52645800	Active TSS	Rectal Mucosa Donor 31	rectum
11	chr10:52644200-52645400	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr10:52644200-52645400	Active TSS	Rectal Smooth Muscle	rectum
13	chr10:52644600-52646400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:52644800-52645400	Active TSS	Colonic Mucosa	Colon
15	chr10:52645000-52645600	Active TSS	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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