Variant report

Variant	rs10995206
Chromosome Location	chr10:52734441-52734442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10128514	0.83[EUR][1000 genomes]
rs1015288	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761651	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761657	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10822020	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10822032	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10822040	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10822045	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10822095	0.83[EUR][1000 genomes]
rs10995339	0.86[EUR][1000 genomes]
rs2879549	0.81[EUR][1000 genomes]
rs4041333	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479833	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479834	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479835	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479836	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479839	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7070037	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7070266	0.86[EUR][1000 genomes]
rs7076050	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7091997	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7093621	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7099130	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7100141	0.83[EUR][1000 genomes]
rs7900993	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7905728	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7916612	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52731200-52734600	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links