Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10508935	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761807	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10761810	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10761811	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10761831	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10822197	0.94[EUR][1000 genomes]
rs10822210	0.81[EUR][1000 genomes]
rs10822211	0.81[EUR][1000 genomes]
rs10822229	0.84[EUR][1000 genomes]
rs10822230	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10995617	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10995620	0.81[EUR][1000 genomes]
rs10995651	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10995655	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10995681	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220644	0.82[EUR][1000 genomes]
rs12221226	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12415785	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16913900	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16913956	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2879544	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9414805	0.92[EUR][1000 genomes]
rs9414807	0.90[EUR][1000 genomes]
rs9414809	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
2	chr10:52853000-52871200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:52856600-52877200	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:52857600-52877200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:52858800-52873000	Weak transcription	Aorta	Aorta
6	chr10:52864200-52869000	Weak transcription	HUVEC	blood vessel
7	chr10:52864400-52868200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:52864400-52868400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:52864800-52870200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:52866000-52868600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:52866400-52868200	Weak transcription	Osteobl	bone
12	chr10:52866600-52868200	Weak transcription	NHLF	lung
13	chr10:52866800-52868000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:52867400-52876400	Weak transcription	Left Ventricle	heart
15	chr10:52867600-52868600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:52867600-52871800	Enhancers	NHDF-Ad	bronchial
17	chr10:52867600-52876000	Weak transcription	Psoas Muscle	Psoas
18	chr10:52867800-52870400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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