Variant report

Variant	rs10995788
Chromosome Location	chr10:52886613-52886614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10508935	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10740130	0.81[EUR][1000 genomes]
rs10761807	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761831	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10822188	0.82[ASN][1000 genomes]
rs10822189	0.86[EUR][1000 genomes]
rs10822194	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10822198	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10822210	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10822211	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10822229	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10995620	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10995651	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10995655	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10995790	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218335	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12220644	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221226	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12415785	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12767015	0.82[ASN][1000 genomes]
rs16913956	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2339675	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7074892	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7084128	0.86[EUR][1000 genomes]
rs7084767	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7097311	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7912628	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9299457	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9414806	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9414808	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9414810	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9415709	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9415710	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9415711	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3387347	chr10:52884746-52886944	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3443811	chr10:52884846-52887119	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52876800-52900400	Weak transcription	Left Ventricle	heart
2	chr10:52877600-52889600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:52878600-52899200	Weak transcription	Aorta	Aorta
4	chr10:52879400-52889600	Weak transcription	NHLF	lung
5	chr10:52883800-52896000	Weak transcription	Psoas Muscle	Psoas

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