Variant report

Variant	rs10995918
Chromosome Location	chr10:52938366-52938367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1871630	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1904676	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904677	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1904683	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1904687	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1904688	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1904689	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1904692	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1904693	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1904695	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1904696	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1904697	0.82[ASN][1000 genomes]
rs2339731	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2339732	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3851088	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3862576	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3862579	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3998228	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4505006	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6479991	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7068022	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7085697	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7893773	0.95[ASN][1000 genomes]
rs9414844	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9415733	0.93[ASN][1000 genomes]
rs9633538	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:52929800-52944600	Weak transcription	Left Ventricle	heart
3	chr10:52936000-52941200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:52936800-52964400	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links