Variant report

Variant	rs11003655
Chromosome Location	chr10:55265383-55265384
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11003668	0.95[AFR][1000 genomes]
rs11003672	0.95[AFR][1000 genomes]
rs11003675	1.00[AMR][1000 genomes]
rs12241786	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12247566	0.95[AFR][1000 genomes]
rs12248992	1.00[AMR][1000 genomes]
rs55888113	1.00[AMR][1000 genomes]
rs56129872	1.00[AMR][1000 genomes]
rs59758158	1.00[AMR][1000 genomes]
rs61358536	1.00[AMR][1000 genomes]
rs74134588	0.95[AFR][1000 genomes]
rs74134707	1.00[AMR][1000 genomes]
rs74134728	1.00[AMR][1000 genomes]
rs74134731	1.00[AMR][1000 genomes]
rs74134732	1.00[AMR][1000 genomes]
rs9988784	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1037480	chr10:55102814-55289571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2755889	chr10:55150173-55278481	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1048399	chr10:55151470-55313737	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55259400-55272600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:55259800-55268400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:55261000-55266800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:55264200-55277200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:55264400-55269200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:55264800-55267400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:55264800-55267600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:55265000-55265400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
9	chr10:55265200-55265400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:55265200-55267000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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