Variant report

Variant	rs11005729
Chromosome Location	chr10:51524671-51524672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11003820	1.00[AMR][1000 genomes]
rs11004361	1.00[AMR][1000 genomes]
rs11004455	1.00[AMR][1000 genomes]
rs11005274	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12246321	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12247763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249198	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250658	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914406	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914420	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56301424	1.00[AMR][1000 genomes]
rs59436713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74131171	1.00[AMR][1000 genomes]
rs74131182	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758219	chr10:50971974-51925166	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	esv2759749	chr10:50971974-51925166	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv428232	chr10:50971974-51925166	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv1830900	chr10:51187411-51903662	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv895383	chr10:51260747-51724915	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1048474	chr10:51330433-51545872	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv508583	chr10:51385007-51595892	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:51518600-51525000	Weak transcription	Thymus	Thymus
2	chr10:51519400-51525000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:51520200-51524800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:51521600-51525000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:51521600-51525200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:51522000-51524800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:51522600-51524800	Weak transcription	K562	blood
8	chr10:51524400-51527800	Enhancers	HepG2	liver
9	chr10:51524600-51525000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:51524600-51525200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:51524600-51525400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:51524600-51526000	Enhancers	Fetal Thymus	thymus
13	chr10:51524600-51527000	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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