Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25464792..25468231-chr10:25470120..25472618,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233642	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10128299	1.00[CEU][hapmap]
rs10508690	1.00[CEU][hapmap]
rs11014435	0.86[YRI][hapmap]
rs11014454	1.00[CEU][hapmap]
rs11014475	1.00[CEU][hapmap]
rs11014480	1.00[CEU][hapmap]
rs12250636	1.00[CEU][hapmap]
rs12258880	1.00[CEU][hapmap]
rs12263407	1.00[CEU][hapmap]
rs12265296	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12265550	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1339997	1.00[CEU][hapmap]
rs16925493	1.00[CEU][hapmap]
rs16925518	1.00[CEU][hapmap]
rs7073171	1.00[CEU][hapmap]
rs7074602	1.00[CEU][hapmap]
rs7075587	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7077890	1.00[CEU][hapmap]
rs7080343	1.00[CEU][hapmap]
rs7086178	1.00[EUR][1000 genomes]
rs7090132	1.00[CEU][hapmap]
rs7094735	1.00[CHB][hapmap]
rs7099168	1.00[CEU][hapmap]
rs7101272	1.00[CEU][hapmap]
rs7902783	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7903171	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7906676	1.00[CEU][hapmap]
rs7918295	1.00[CEU][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9988788	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25467600-25475200	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25470200-25472200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25471800-25472400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr10:25472000-25472200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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